(Q33784297)

29 July 2017

title

Computer simulation of explicit proton translocation in cytochrome c oxidase: the D-pathway (English)

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29 July 2017

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2

Gregory A Voth

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29 July 2017

Jiancong Xu

1

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29 July 2017

language of work or name

English

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publication date

27 April 2005

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

19

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29 July 2017

page(s)

6795-6800

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Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

A computer simulation study of the hydrated proton in a synthetic proton channel

4 July 2018

1 reference

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Direct observation of protonation reactions during the catalytic cycle of cytochrome c oxidase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Molecular dynamics simulation of proton transport through the influenza A virus M2 channel

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Molecular dynamics simulation of proton transport near the surface of a phospholipid membrane

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

The formation and dynamics of proton wires in channel environments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Canonical dynamics: Equilibrium phase-space distributions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Structure at 2.7 A resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Glutamic acid 286 in subunit I of cytochrome bo3 is involved in proton translocation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

A novel method for structure-based prediction of ion channel conductance properties.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Insight into the active-site structure and function of cytochrome oxidase by analysis of site-directed mutants of bacterial cytochrome aa3 and cytochrome bo.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Site-directed mutagenesis of highly conserved residues in helix VIII of subunit I of the cytochrome bo ubiquinol oxidase from Escherichia coli: an amphipathic transmembrane helix that may be important in conveying protons to the binuclear center.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Possible proton relay pathways in cytochrome c oxidase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Molecular mechanisms for proton transport in membranes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Proton pump coupled to cytochrome c oxidase in mitochondria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Substitution of asparagine for aspartate-135 in subunit I of the cytochrome bo ubiquinol oxidase of Escherichia coli eliminates proton-pumping activity.

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Cytochrome c oxidase (heme aa3) from Paracoccus denitrificans: analysis of mutations in putative proton channels of subunit I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Conformational changes in azurin from Pseudomona aeruginosa induced through chemical and physical protocols

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

21 January 2018

The Grotthuss mechanism

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

The mechanism of proton exclusion in aquaporin channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Proton pumping mechanism and catalytic cycle of cytochrome c oxidase: Coulomb pump model with kinetic gating

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Intramolecular proton-transfer reactions in a membrane-bound proton pump: the effect of pH on the peroxy to ferryl transition in cytochrome c oxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Quantum molecular dynamics simulation of proton transfer in cytochrome c oxidase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Water-gated mechanism of proton translocation by cytochrome c oxidase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Computer simulation of water in cytochrome c oxidase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100745

Proton Translocation by CytochromecOxidase Can Take Place without the Conserved Glutamic Acid in Subunit I†

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Bound water in the proton translocation mechanism of the haem-copper oxidases

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408117102

Site-directed mutagenesis of residues lining a putative proton transfer pathway in cytochrome c oxidase from Rhodobacter sphaeroides

21 January 2018

1 reference

12 December 2020

Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans

1 reference

12 December 2020

Fourier transform infrared evidence for connectivity between CuB and glutamic acid 286 in cytochrome bo3 from Escherichia coli

1 reference

12 December 2020

Purification, crystallization and preliminary crystallographic studies of an integral membrane protein, cytochrome bo3 ubiquinol oxidase from Escherichia coli

1 reference

12 December 2020

Oxygen and proton pathways in cytochrome c oxidase

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0408117102

1 reference

29 July 2017

0 references

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29 July 2017

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