(Q33786295)

29 July 2017

title

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing (English)

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29 July 2017

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Gabriella Rozera

5

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Alessandro Bruselles

object named as

Alessandro Bruselles

Maria Rosaria Capobianchi

3

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object named as

Maria Rosaria Capobianchi

8

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Isabella Abbate

4

object named as

Isabella Abbate

1 reference

29 July 2017

6

Donatella Vincenti

1 reference

29 July 2017

Mattia C F Prosperi

1

1 reference

29 July 2017

Luciano Prosperi

2

1 reference

29 July 2017

Maria Carmela Solmone

7

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29 July 2017

Giovanni Ulivi

9

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29 July 2017

publication date

5 January 2011

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29 July 2017

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29 July 2017

volume

12

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29 July 2017

page(s)

5

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Creative Commons Attribution 2.0 Generic

29 July 2017

copyright license

start time

5 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

describes a project that uses

massive parallel sequencing

1 reference

based on heuristic

inferred from title

cites work

Sequencing technologies - the next generation

1 reference

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Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Next-generation sequencing: from basic research to diagnostics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Mapping short DNA sequencing reads and calling variants using mapping quality scores

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Viral population estimation using pyrosequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

The complete genome of an individual by massively parallel DNA sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

The impact of next-generation sequencing technology on genetics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Accuracy and quality of massively parallel DNA pyrosequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Bioinformatics for whole-genome shotgun sequencing of microbial communities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

ARACHNE: a whole-genome shotgun assembler

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

A whole-genome assembly of Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

CAP3: A DNA sequence assembly program

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

RNA virus mutations and fitness for survival

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

A new DNA sequence assembly program

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Genomic mapping by fingerprinting random clones: a mathematical analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Aggressive assembly of pyrosequencing reads with mates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Rapid whole-genome mutational profiling using next-generation sequencing technologies

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Population sequencing using short reads: HIV as a case study.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Sequence alignment: an approximation law for the Z-value with applications to databank scanning.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

An improved algorithm for matching biological sequences.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022557

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21208435

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-5

1 reference

journals/bmcbi/ProsperiPBARVSCU11

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

29 July 2017

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