(Q33789602)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

N-gram analysis of 970 microbial organisms reveals presence of biological language models (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

Hatice Ülkü Osmanbeyoğlu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Madhavi Ganapathiraju

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Hatice Ulku Osmanbeyoglu

1

1 reference

PubMed publication ID

21219653

29 July 2017

Madhavi K Ganapathiraju

2

1 reference

PubMed publication ID

21219653

29 July 2017

publication date

10 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

19 January 2020

copyright license

start time

10 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Perplexity analysis of obesity news coverage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

A visual framework for sequence analysis using n-grams and spectral rearrangement

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Using genomic signatures for HIV-1 sub-typing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Biosolutions to the energy problem

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

The prokaryotic tree of life: past, present... and future?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Reduced selection leads to accelerated gene loss in Shigella

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

A tree of life based on protein domain organizations.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

The reach of the genome signature in prokaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Phylogeny determined by protein domain content

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Whole-genome prokaryotic phylogeny

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Evolutionary implications of microbial genome tetranucleotide frequency biases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Plants and animals share functionally common bacterial virulence factors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

A novel method of protein sequence classification based on oligopeptide frequency analysis and its application to search for functional sites and to domain localization.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Dinucleotide relative abundance extremes: a genomic signature

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Analysis of n-gram based promoter recognition methods and application to whole genome promoter prediction.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

n-Gram characterization of genomic islands in bacterial genomes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Could n-gram analysis contribute to genomic island determination?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Evolutionary insights from suffix array-based genome sequence analysis.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

n-gram-based classification and unsupervised hierarchical clustering of genome sequences.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

BLMT: statistical sequence analysis using N-grams.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Phylogenetic trees based on gene content

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Integrated gene and species phylogenies from unaligned whole genome protein sequences.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Classification and identification of proteins by means of common and specific amino acid n-tuples in unaligned sequences.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Genomics of Host-Restricted Pathogens of the Genus Bartonella

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027111

Protein classification based on text document classification techniques

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21219653

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Small bugs, big business: the economic power of the microbe

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21219653

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/OsmanbeyogluG11

19 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21219653%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PubMed publication ID

21219653

1 reference