(Q37119483)

18 August 2017

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title

The prokaryotic tree of life: past, present... and future? (English)

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18 August 2017

James A Cotton

2

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James O. McInerney

series ordinal

1

object named as

James O McInerney

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Davide Pisani

series ordinal

3

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author name string

Davide Pisani

series ordinal

3

1 reference

PubMed ID

18367290

18 August 2017

language of work or name

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25 March 2008

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Trends in Ecology & Evolution

18 August 2017

6

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based on heuristic

inferred from page(s)

published in

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18 August 2017

23

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18 August 2017

276-281

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18 August 2017

5

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Comparative Cataloging of 16S Ribosomal Ribonucleic Acid: Molecular Approach to Procaryotic Systematics

18 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

The ring of life provides evidence for a genome fusion origin of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Supertrees disentangle the chimerical origin of eukaryotic genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Gene recombination in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Molecules as documents of evolutionary history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

The phylogeny of prokaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Phylogenetic classification and the universal tree

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Horizontal transfer of ATPase genes--the tree of life becomes a net of life.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

The rooting of the universal tree of life is not reliable.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Evidence for a chimeric nature of nuclear genomes: eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Molecular archaeology of the Escherichia coli genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Lower Cambrian vertebrates from south China

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Genome-wide experimental determination of barriers to horizontal gene transfer.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Genetics. Paradigm for life.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Horizontal gene transfer in prokaryotes: quantification and classification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

The genome of M. acetivorans reveals extensive metabolic and physiological diversity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

A molecular view of microbial diversity and the biosphere

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Something for everyone. Horizontal gene transfer in evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Horizontal gene transfer: a critical view

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Horizontal gene transfer among microbial genomes: new insights from complete genome analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Detection of lateral gene transfer among microbial genomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

On surrogate methods for detecting lateral gene transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Codon bias and base composition are poor indicators of horizontally transferred genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Whole-Genome Analysis of Photosynthetic Prokaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Horizontal gene transfer among genomes: the complexity hypothesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Genomic evidence for two functionally distinct gene classes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Phylogenetics and the cohesion of bacterial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Genomics and the irreducible nature of eukaryote cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Matrix representation with parsimony, taxonomic congruence, and total evidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

7 January 2021

The universal ancestor

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Biology's next revolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Evidence for horizontal gene transfer in evolution of elongation factor Tu in enterococci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Case of localized recombination in 23S rRNA genes from divergent bradyrhizobium lineages associated with neotropical legumes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Computing prokaryotic gene ubiquity: rescuing the core from extinction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Prokaryotic evolution in light of gene transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

7 January 2021

The tree of one percent.

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Eubacterial phylogeny based on translational apparatus proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Archaeal phylogeny based on ribosomal proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

The evolution of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Pattern pluralism and the Tree of Life hypothesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Highways of gene sharing in prokaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

Genome-scale approaches to resolving incongruence in molecular phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

A positive definition of prokaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.01.008

10.1016/J.TREE.2008.01.008

7 January 2021

Identifiers

DOI

1 reference

18 August 2017

1 reference

PubMed ID

18367290