(Q33796436)

29 July 2017

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title

Forest tree genomics: growing resources and applications (English)

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29 July 2017

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2

Antoine Kremer

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29 July 2017

1

David B Neale

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29 July 2017

publication date

1 February 2011

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29 July 2017

published in

Nature Reviews Genetics

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29 July 2017

volume

12

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29 July 2017

issue

2

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29 July 2017

page(s)

111-122

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Genomics to tree breeding and forest health

29 July 2017

cites work

1 reference

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 January 2018

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Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome

21 January 2018

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The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

21 January 2018

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Population, quantitative and comparative genomics of adaptation in forest trees

21 January 2018

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Genomic diversity in forest trees

21 January 2018

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Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms.

21 January 2018

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Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses.

21 January 2018

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Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map.

21 January 2018

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Association genetics of complex traits in conifers

21 January 2018

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A new scenario for the quaternary history of European beech populations: palaeobotanical evidence and genetic consequences.

21 January 2018

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Imprints of glacial refugia in the modern genetic diversity of Pinus sylvestris

21 January 2018

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Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]

21 January 2018

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Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations

21 January 2018

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Patterns of polymorphism resulting from long-range colonization in the Mediterranean conifer Aleppo pine.

21 January 2018

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Patterns of divergence among conifer ESTs and polymorphism in Pinus sylvestris identify putative selective sweeps

21 January 2018

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"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

21 January 2018

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Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

21 January 2018

1 reference

Association genetics of coastal Douglas fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-hardiness related traits

21 January 2018

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Clinal variation in phyB2, a candidate gene for day-length-induced growth cessation and bud set, across a latitudinal gradient in European aspen (Populus tremula).

21 January 2018

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Adaptation, migration or extirpation: climate change outcomes for tree populations

21 January 2018

1 reference

Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae).

21 January 2018

1 reference

Evolution of genome size in pines (Pinus) and its life-history correlates: supertree analyses

21 January 2018

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Analysis of xylem formation in pine by cDNA sequencing

21 January 2018

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Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

21 January 2018

1 reference

Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don.

21 January 2018

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Comparative mapping in the Pinaceae

21 January 2018

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Nucleotide diversity and linkage disequilibrium in loblolly pine

21 January 2018

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Genetic structure and evolutionary history of a diploid hybrid pine Pinus densata inferred from the nucleotide variation at seven gene loci

21 January 2018

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Selection on nuclear genes in a Pinus phylogeny.

21 January 2018

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Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir.

21 January 2018

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Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

21 January 2018

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Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

21 January 2018

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Trans-species shared polymorphisms at orthologous nuclear gene loci among distant species in the conifer Picea (Pinaceae): implications for the long-term maintenance of genetic diversity in trees

21 January 2018

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Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

21 January 2018

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Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).

21 January 2018

1 reference

The cellulose synthase superfamily in fully sequenced plants and algae

21 January 2018

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Characterization of full-length enriched expressed sequence tags of stress-treated poplar leaves

21 January 2018

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Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

21 January 2018

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Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of [...]

21 January 2018

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A Populus EST resource for plant functional genomics

21 January 2018

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An excess of nonsynonymous polymorphism and extensive haplotype structure at the PtABI1B locus in European aspen (Populus tremula): a case of balancing selection in an obligately outcrossing plant?

21 January 2018

1 reference

Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa

21 January 2018

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Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L., Salicaceae).

21 January 2018

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A cytometric exercise in plant DNA histograms, with 2C values for 70 species

21 January 2018

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Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

21 January 2018

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High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

21 January 2018

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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

21 January 2018

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A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 5S rDNA markers

21 January 2018

1 reference

Genomics of forest and ecosystem health in the Fagaceae: meeting report

21 January 2018

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Identification of genes expressed during early somatic embryogenesis in Pinus radiata.

21 January 2018

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Microarray analyses of gene expression during adventitious root development in Pinus contorta

21 January 2018

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Up, down and up again is a signature global gene expression pattern at the beginning of gymnosperm embryogenesis

21 January 2018

1 reference

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

21 January 2018

1 reference

Gene expression during formation of earlywood and latewood in loblolly pine: expression profiles of 350 genes.

21 January 2018

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Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

21 January 2018

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Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion

21 January 2018

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Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor.

21 January 2018

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Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system

21 January 2018

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Microarray gene expression profiling of developmental transitions in Sitka spruce (Picea sitchensis) apical shoots.

21 January 2018

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Variation in transcript abundance during somatic embryogenesis in gymnosperms

21 January 2018

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Conifer defense against insects: proteome analysis of Sitka spruce (Picea sitchensis) bark induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi).

21 January 2018

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Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response.

21 January 2018

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Dirigent proteins in conifer defense: gene discovery, phylogeny, and differential wound- and insect-induced expression of a family of DIR and DIR-like genes in spruce (Picea spp.).

21 January 2018

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Dirigent proteins in conifer defense II: Extended gene discovery, phylogeny, and constitutive and stress-induced gene expression in spruce (Picea spp.).

21 January 2018

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Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis).

21 January 2018

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Transcriptomic changes in wind-exposed poplar leaves are dependent on developmental stage.

21 January 2018

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Modular gene expression in Poplar: a multilayer network approach.

21 January 2018

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The poplar root transcriptome: analysis of 7000 expressed sequence tags

21 January 2018

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Transcriptional profiles of the annual growth cycle in Populus deltoides.

21 January 2018

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Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar.

21 January 2018

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Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis

21 January 2018

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Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem of Populus

21 January 2018

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A transcriptional roadmap to wood formation

21 January 2018

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A high-resolution transcript profile across the wood-forming meristem of poplar identifies potential regulators of cambial stem cell identity

21 January 2018

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Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays

21 January 2018

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Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi

21 January 2018

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Priming defense genes and metabolites in hybrid poplar by the green leaf volatile cis-3-hexenyl acetate.

21 January 2018

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The transcriptional response of hybrid poplar (Populus trichocarpa x P. deltoides) to infection by Melampsora medusae leaf rust involves induction of flavonoid pathway genes leading to the accumulation of proanthocyanidins.

21 January 2018

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Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions

21 January 2018

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Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert

21 January 2018

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Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia

21 January 2018

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A microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

21 January 2018

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Within-tree transcriptome profiling in wood-forming tissues of a fast-growing Eucalyptus tree.

21 January 2018

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Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus

21 January 2018

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Transcriptome analysis of bud burst in sessile oak (Quercus petraea).

21 January 2018

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Identification of adaptation-specific differences in mRNA expression of sessile and pedunculate oak based on osmotic-stress-induced genes

21 January 2018

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Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

21 January 2018

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Overall alteration of circadian clock gene expression in the chestnut cold response

21 January 2018

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Genetic dissection of height in maritime pine seedlings raised under accelerated growth conditions

21 January 2018

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Identification of QTLs influencing wood property traits in loblolly pine ( Pinus taeda L.). II. Chemical wood properties.

21 January 2018

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Association genetics in Pinus taeda L. I. Wood property traits.

21 January 2018

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Identification of quantitative trait loci affecting virulence in the basidiomycete Heterobasidion annosum s.l

21 January 2018

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Detection of a major gene for resistance to fusiform rust disease in loblolly pine by genomic mapping

21 January 2018

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Association genetics in Pinus taeda L. II. Carbon isotope discrimination

21 January 2018

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Elucidating genomic regions determining enhanced leaf growth and delayed senescence in elevated CO2.

21 January 2018

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Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection.

21 January 2018

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Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus

21 January 2018

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Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid

21 January 2018

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Polymorphisms in cinnamoyl CoA reductase (CCR) are associated with variation in microfibril angle in Eucalyptus spp

21 January 2018

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Few Mendelian genes underlie the quantitative response of a forest tree, Eucalyptus globulus, to a natural fungal epidemic.

21 January 2018

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Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L.

21 January 2018

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White pine blister rust: simply inherited resistance in sugar pine

21 January 2018

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31 March 2020

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Historical and contemporary dynamics of adaptive differentiation in European oaks

31 March 2020

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Nucleotide variation in genes involved in wood formation in two pine species

31 March 2020

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Megagametophyte-derived linkage maps of white spruce (Picea glauca) based on RAPD, SCAR and ESTP markers

31 March 2020

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Analysis of 70,000 EST sequences to study divergence between two closely related Populus species

31 March 2020

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Molecular genetics of growth and development in Populus. I. Triploidy in hybrid poplars

31 March 2020

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Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs)

31 March 2020

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Molecular mapping of resistance to blight in an interspecific cross in the genus castanea

31 March 2020

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Correlating gene expression to physiological parameters and environmental conditions during cold acclimation of Pinus sylvestris, identification of molecular markers using cDNA microarrays

31 March 2020

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Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus

31 March 2020

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The transcriptome of Populus in elevated CO2

31 March 2020

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Transcript profiling of Eucalyptus xylem genes during tension wood formation

31 March 2020

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Gene expression in Eucalyptus branch wood with marked variation in cellulose microfibril orientation and lacking G-layers

31 March 2020

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Congruence in QTL for adventitious rooting in Pinus elliottii × Pinus caribaea hybrids resolves between and within-species effects

31 March 2020

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QTL associations for density and diameter in Pinus radiata and the potential for marker-aided selection

31 March 2020

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Genetic analysis of phenotypic variation for ectomycorrhiza formation in an interspecific F1 poplar full-sib family

31 March 2020

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Phenotypic variation and quantitative trait locus identification for osmotic potential in an interspecific hybrid inbred F2 poplar pedigree grown in contrasting environments

31 March 2020

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Detection and stability of quantitative trait loci (QTL) in Eucalyptus globulus

31 March 2020

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Identification of quantitative trait loci for wood and fibre properties in two full-sib properties of Eucalyptus globulus

31 March 2020

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Mapping of quantitative trait loci influencing frost tolerance in Eucalyptus nitens

31 March 2020

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Results on Quantitative Trait Loci for Flushing Date in Oaks Can Be Transferred to Different Segregating Progenies

31 March 2020

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Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L

31 March 2020

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Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns

31 March 2020

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Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers

31 March 2020

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12 December 2020

Genetic variability at neutral markers, quantitative trait land trait in a subdivided population under selection

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12 December 2020

A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees

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12 December 2020

Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.

1 reference

12 December 2020

Molecular genetics of growth and development in populus. IV. Mapping QTLs with large effects on growth, form, and phenology traits in a forest tree.

1 reference

12 December 2020

Anchored reference loci in loblolly pine (Pinus taeda L.) for integrating pine genomics

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12 December 2020

Genetic basis of climatic adaptation in scots pine by bayesian quantitative trait locus analysis

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12 December 2020

Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas fir. III. Quantitative trait loci-by-environment interactions.

1 reference

12 December 2020

Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers

1 reference

12 December 2020

Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.). III. QTL Verification and candidate gene mapping

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12 December 2020

Identifiers

DOI

10.1038/NRG2931

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Dimensions Publication ID

29 July 2017

1013788172

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