(Q33799216)

29 July 2017

Analysis and prediction of translation rate based on sequence and functional features of the mRNA. (English)

1 reference

29 July 2017

8

Yu-Dong Cai

1 reference

29 July 2017

Yufang Zheng

4

0 references

author name string

Tao Huang

1

1 reference

29 July 2017

Sibao Wan

2

1 reference

29 July 2017

Zhongping Xu

3

1 reference

29 July 2017

Kai-Yan Feng

5

1 reference

29 July 2017

Hai-Peng Li

6

1 reference

29 July 2017

Xiangyin Kong

7

1 reference

29 July 2017

language of work or name

English

0 references

publication date

6 January 2011

1 reference

29 July 2017

1 reference

29 July 2017

6

1 reference

29 July 2017

1

1 reference

29 July 2017

e16036

1 reference

Creative Commons Attribution 4.0 International

29 July 2017

start time

6 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks

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Prediction of pharmacological and xenobiotic responses to drugs based on time course gene expression profiles

4 July 2018

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Dysregulation of protein synthesis and disease

4 July 2018

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Properties of untranslated regions of the S. cerevisiae genome

4 July 2018

1 reference

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Coding-sequence determinants of gene expression in Escherichia coli

4 July 2018

1 reference

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

STRING 8--a global view on proteins and their functional interactions in 630 organisms

4 July 2018

1 reference

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The prediction of interferon treatment effects based on time series microarray gene expression profiles

4 July 2018

1 reference

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4 July 2018

The Vienna RNA websuite

1 reference

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Determinants of protein abundance and translation efficiency in S. cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

RNA-binding proteins HuR and PTB promote the translation of hypoxia-inducible factor 1alpha

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Posttranscriptional expression regulation: what determines translation rates?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Translational control of cytochrome c by RNA-binding proteins TIA-1 and HuR

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast

4 July 2018

1 reference

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Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Minimum redundancy feature selection from microarray gene expression data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Molecular mechanisms of translational control

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Integrated genomic and proteomic analyses of gene expression in Mammalian cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Saccharomyces genome database: underlying principles and organisation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Hierarchy of sequence-dependent features associated with prokaryotic translation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Global analysis of protein expression in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Comparing protein abundance and mRNA expression levels on a genomic scale

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Prediction of coordination number and relative solvent accessibility in proteins.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Prediction of protein cellular attributes using pseudo-amino acid composition

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Recognition of a protein fold in the context of the Structural Classification of Proteins (SCOP) classification

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Correlation between protein and mRNA abundance in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Predicting protein folding types by distance functions that make allowances for amino acid interactions.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

The structural dependence of amino acid hydrophobicity parameters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Amino acid difference formula to help explain protein evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Translation rate modification by preferential codon usage: intragenic position effects.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

The classification and origins of protein folding patterns

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

A kinetic model of protein synthesis. Application to hemoglobin synthesis and translational control

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017080

Online synonymous codon usage analyses with the ade4 and seqinR packages.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016036

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016036

Amino acid side chain parameters for correlation studies in biology and pharmacology

21 January 2018

1 reference

12 December 2020

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes

1 reference

12 December 2020

Correlation between mRNA and protein abundance in Desulfovibrio vulgaris: a multiple regression to identify sources of variations

1 reference

12 December 2020

A model of protein translation including codon bias, nonsense errors, and ribosome recycling

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0016036

Identifiers

DOI

1 reference

29 July 2017

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1 reference

29 July 2017

1 reference