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Orthologs, paralogs and genome comparisons
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scholarly article
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Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
review article
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Europe PubMed Central
title
Orthologs, paralogs and genome comparisons
(English)
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stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
author
Johann Peter Gogarten
series ordinal
1
object named as
J P Gogarten
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Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
author name string
L Olendzenski
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
publication date
1 December 1999
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stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
published in
Current Opinion in Genetics & Development
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stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
volume
9
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
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29 July 2017
page(s)
630-636
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
issue
6
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
cites work
How long did it take for life to begin and evolve to cyanobacteria?
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Redundant genes
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Comparison of the complete protein sets of worm and yeast: orthology and divergence
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Distinguishing Homologous from Analogous Proteins
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7 January 2021
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Phylogenetic origins and adaptive evolution of avian and mammalian haemoglobin genes
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Which is the most conserved group of proteins? Homology-orthology, paralogy, xenology, and the fusion of independent lineages.
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MICROBIAL DIVERSITY: Domains and Kingdoms
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Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
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Horizontal transfer of ATPase genes--the tree of life becomes a net of life.
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Phylogenetic classification and the universal tree
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The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis.
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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii
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7 January 2021
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Improved tools for biological sequence comparison
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7 January 2021
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Basic local alignment search tool
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Convergent evolution of amino acid usage in archaebacterial and eubacterial lineages adapted to high salt
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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
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Rapid and sensitive protein similarity searches
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7 January 2021
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Convergent evolution: the need to be explicit
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7 January 2021
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The prokaryote-to-eukaryote transition reflected in the evolution of the V/F/A-ATPase catalytic and proteolipid subunits
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7 January 2021
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Salmonella typhimurium mutants defective in flagellar filament regrowth and sequence similarity of FliI to F0F1, vacuolar, and archaebacterial ATPase subunits
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7 January 2021
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Phylogenetic analysis of sequences from diverse bacteria with homology to the Escherichia coli rho gene
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7 January 2021
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Widespread protein sequence similarities: origins of Escherichia coli genes
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Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module.
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Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
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A common fold for peptide synthetases cleaving ATP to ADP: glutathione synthetase and D-alanine:d-alanine ligase of Escherichia coli
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Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins
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Protein sequence similarity searches using patterns as seeds
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7 January 2021
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
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Phylogenetic characterization of novel transport protein families revealed by genome analyses
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Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities
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Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
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Beyond complete genomes: from sequence to structure and function
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Origins of Prokaryotes, Eukaryotes, Mitochondria, and Chloroplasts
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Evolution of proton pumping ATPases: Rooting the tree of life.
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Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes
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7 January 2021
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Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
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7 January 2021
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Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain.
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7 January 2021
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The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny.
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7 January 2021
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Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
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7 January 2021
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The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery
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7 January 2021
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Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes
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7 January 2021
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The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria.
1 reference
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Cloning of the HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene
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Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes
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The nature of the last universal ancestor and the root of the tree of life, still open questions
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The early evolution of cellular life.
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7 January 2021
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The universal ancestor
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Archaea: narrowing the gap between prokaryotes and eukaryotes
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The hydrogen hypothesis for the first eukaryote
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7 January 2021
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Was the nucleus the first endosymbiont?
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Gene Duplication and Gene Conversion in the Caenorhabditis elegans Genome
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7 January 2021
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Molecular evidence for an ancient duplication of the entire yeast genome
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7 January 2021
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Extent of genomic rearrangement after genome duplication in yeast
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Evidence for Ancient Tetraploidy and Conservation of Linkage Groups in Mammalian Chromosomes
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7 January 2021
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Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse
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7 January 2021
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Vertebrate genome evolution and the zebrafish gene map
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7 January 2021
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Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution.
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Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history
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7 January 2021
based on heuristic
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Eukaryote genome duplication - where's the evidence?
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7 January 2021
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Vertebrate genome evolution--the decade ahead
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7 January 2021
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Evidence of independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
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7 January 2021
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The evolution of the type I interferons.
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7 January 2021
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Fine-resolution analysis of products of intrachromosomal homeologous recombination in mammalian cells
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Fine-resolution mapping of spontaneous and double-strand break-induced gene conversion tracts in Saccharomyces cerevisiae reveals reversible mitotic conversion polarity
1 reference
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7 January 2021
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Identifiers
DOI
10.1016/S0959-437X(99)00029-5
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
Fatcat ID
release_s2dq6mrk7jboxmrkhs2soybwni
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Fatcat
reference URL
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24 November 2022
based on heuristic
mapped directly with Wikidata item
PubMed ID
10607614
1 reference
stated in
Europe PubMed Central
PubMed ID
10607614
retrieved
29 July 2017
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