(Q33801686)

29 July 2017

title

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters (English)

1 reference

29 July 2017

3

Ramunas Stepanauskas

0 references

Brandon K. Swan

object named as

Brandon K Swan

series ordinal

2

0 references

Mary Ann Moran

object named as

Mary Ann Moran

series ordinal

5

0 references

Austin L. Hughes

series ordinal

4

object named as

Austin L Hughes

1 reference

29 July 2017

Haiwei Luo

1

1 reference

29 July 2017

publication date

23 January 2014

1 reference

29 July 2017

1 reference

29 July 2017

volume

8

1 reference

29 July 2017

issue

7

1 reference

29 July 2017

page(s)

1428-1439

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2013.248

29 July 2017

exact match

0 references

cites work

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Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

4 July 2018

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4 July 2018

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Streamlining and core genome conservation among highly divergent members of the SAR11 clade

4 July 2018

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4 July 2018

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A selective force favoring increased G+C content in bacterial genes

4 July 2018

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The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss

4 July 2018

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Reduced selective constraint in endosymbionts: elevation in radical amino acid replacements occurs genome-wide

4 July 2018

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Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

4 July 2018

1 reference

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Extreme genome reduction in symbiotic bacteria

4 July 2018

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4 July 2018

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Metagenomics of the water column in the pristine upper course of the Amazon river

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The significance of nitrogen cost minimization in proteomes of marine microorganisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Ongoing purifying selection on intergenic spacers in group A streptococcus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Genomic and functional adaptation in surface ocean planktonic prokaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Evidence that mutation is universally biased towards AT in bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Evidence of selection upon genomic GC-content in bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The neutral theory of molecular evolution in the genomic era

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Compositional heterogeneity and phylogenomic inference of metazoan relationships

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The genomic basis of trophic strategy in marine bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The consequences of genetic drift for bacterial genome complexity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Assembling the marine metagenome, one cell at a time

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

More radical amino acid replacements in primates than in rodents: support for the evolutionary role of effective population size

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Relaxation of purifying selection on live attenuated vaccine strains of the family Paramyxoviridae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The archaebacterial origin of eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Whole-genome mutational biases in bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

NCBI Reference Sequences: current status, policy and new initiatives

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Near neutrality: leading edge of the neutral theory of molecular evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Ecological genomics of marine Roseobacters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

An application of statistics to comparative metagenomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Overview of the marine roseobacter lineage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Accelerated evolution associated with genome reduction in a free-living prokaryote

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

MAFFT version 5: improvement in accuracy of multiple sequence alignment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Modeling compositional heterogeneity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

MUSCLE: multiple sequence alignment with high accuracy and high throughput

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

T-Coffee: A novel method for fast and accurate multiple sequence alignment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Sequence evolution in bacterial endosymbionts having extreme base compositions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Calibrating bacterial evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

A genomic perspective on protein families

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Inferring phylogenies from DNA sequences of unequal base compositions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Two types of amino acid substitutions in protein evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp.

4 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Assignment of orthologous genes via genome rearrangement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Glycine betaine as a cryoprotectant for prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Polytomies and Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Genome content of uncultivated marine Roseobacters in the surface ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Genome characteristics of a generalist marine bacterial lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

The Nearly Neutral Theory of Molecular Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

d(N)/d(S) does not show positive selection drives separation of polar-tropical SAR11 populations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4069390

Quantifying the Slightly Deleterious Mutation Model of Molecular Evolution

30 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

21 January 2018

1 reference

12 December 2020

Nitrogen versus carbon use in prokaryotic genomes and proteomes

1 reference

12 December 2020

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

1 reference

12 December 2020

Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-Proteobacteria)

1 reference

12 December 2020

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

7 January 2021

inferred from DOI database lookup

Molecular Evolutionary Genetics

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

7 January 2021

inferred from DOI database lookup

Evolutionary Divergence and Convergence in Proteins

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.248

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2013.248

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference