(Q33807591)

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Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders (English)

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Europe PubMed Central

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22 March 2020

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1

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22 March 2020

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Lisa M Tarantino

3

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22 March 2020

Fernando Pardo-Manuel de Villena

4

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22 March 2020

5

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22 March 2020

author name string

Daniel Oreper

1

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Europe PubMed Central

PubMed publication ID

29 July 2017

Yanwei Cai

2

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Europe PubMed Central

PubMed publication ID

29 July 2017

Lisa M Tarantino

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Fernando Pardo-Manuel de Villena

4

1 reference

Europe PubMed Central

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29 July 2017

William Valdar

5

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Europe PubMed Central

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29 July 2017

publication date

7 June 2017

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22 March 2020

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Europe PubMed Central

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22 March 2020

7

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22 March 2020

6

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Europe PubMed Central

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22 March 2020

1623-1630

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Europe PubMed Central

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22 March 2020

Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Genomes of the Mouse Collaborative Cross

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

The Mouse Universal Genotyping Array: From Substrains to Subspecies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Informatics resources for the Collaborative Cross and related mouse populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Quantitative trait locus mapping methods for diversity outbred mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Bayesian modeling of haplotype effects in multiparent populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A new approach for efficient genotype imputation using information from relatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Using the emerging Collaborative Cross to probe the immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Modeling host genetic regulation of influenza pathogenesis in the collaborative cross

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Status and access to the Collaborative Cross population.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Mouse genomic variation and its effect on phenotypes and gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

The variant call format and VCFtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Genetic analysis of complex traits in the emerging Collaborative Cross

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Genomic evaluations with many more genotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A comparison of approaches to account for uncertainty in analysis of imputed genotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Efficient genome ancestry inference in complex pedigrees with inbreeding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Genotype imputation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A new multipoint method for genome-wide association studies by imputation of genotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

A method for fine mapping quantitative trait loci in outbred animal stocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

28 July 2018

Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Structural Variation Shapes the Landscape of Recombination in Mouse.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Editor's Highlight: Candidate Risk Factors and Mechanisms for Tolvaptan-Induced Liver Injury Are Identified Using a Collaborative Cross Approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Reconstruction of Genome Ancestry Blocks in Multiparental Populations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Whole-genome QTL analysis for MAGIC.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Properties and power of the Drosophila Synthetic Population Resource for the routine dissection of complex traits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

The genome architecture of the Collaborative Cross mouse genetic reference population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Methods for testing association between uncertain genotypes and quantitative traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Genotype imputation for genome-wide association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Practical issues in imputation-based association mapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Using progenitor strain information to identify quantitative trait nucleotides in outbred mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Genome-wide association study of leaf architecture in the maize nested association mapping population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473744

30 October 2018

Identifiers

10.1534/G3.117.041491

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

PMC publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28592645%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

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