(Q36769422)

16 August 2017

Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies (English)

1 reference

16 August 2017

4

Allissa Dillman

0 references

Robert Walker

Robert Walker

7

0 references

Andrey A Shabalin

Andrey A Shabalin

10

0 references

Daniah Trabzuni

Daniah Trabzuni

2

0 references

Adaikalavan Ramasamy

Adaikalavan Ramasamy

1

0 references

Michael E. Weale

Michael E Weale

18

0 references

John Anthony Hardy

15

John Hardy

1 reference

16 August 2017

17

Mina Ryten

1 reference

16 August 2017

13

Mark R Cookson

1 reference

16 August 2017

12

Andrew B Singleton

1 reference

16 August 2017

5

Dena G Hernandez

1 reference

16 August 2017

3

J Raphael Gibbs

1 reference

16 August 2017

6

Sampath Arepalli

1 reference

16 August 2017

Colin Smith

8

1 reference

16 August 2017

Gigaloluwa Peter Ilori

9

1 reference

16 August 2017

Yun Li

11

1 reference

16 August 2017

NABEC

14

1 reference

16 August 2017

UKBEC

16

1 reference

16 August 2017

language of work or name

English

0 references

publication date

21 February 2013

1 reference

16 August 2017

Nucleic Acids Research

1 reference

16 August 2017

41

1 reference

16 August 2017

7

1 reference

16 August 2017

e88

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

16 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Mapping cis- and trans-regulatory effects across multiple tissues in twins

1 reference

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MAPT expression and splicing is differentially regulated by brain region: relation to genotype and implication for tauopathies

29 September 2017

1 reference

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Brain expression genome-wide association study (eGWAS) identifies human disease-associated variants

29 September 2017

1 reference

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A new strategy to reduce allelic bias in RNA-Seq readmapping

29 September 2017

1 reference

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Patterns of cis regulatory variation in diverse human populations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

seeQTL: a searchable database for human eQTLs

29 September 2017

1 reference

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Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

AlleleSeq: analysis of allele-specific expression and binding in a network framework

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

A two-stage meta-analysis identifies several new loci for Parkinson's disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Disentangling the role of the tau gene locus in sporadic tauopathies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Genetics and beyond--the transcriptome of human monocytes and disease susceptibility

29 September 2017

1 reference

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Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Understanding mechanisms underlying human gene expression variation with RNA sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Transcriptome genetics using second generation sequencing in a Caucasian population

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Comprehensive survey of SNPs in the Affymetrix exon array using the 1000 Genomes dataset

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

BEDTools: a flexible suite of utilities for comparing genomic features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Genetics of human gene expression: mapping DNA variants that influence gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Mapping complex disease traits with global gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Tissue-specific genetic control of splicing: implications for the study of complex traits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Position dependent mismatch discrimination on DNA microarrays - experiments and model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

A homozygous mutation in human PRICKLE1 causes an autosomal-recessive progressive myoclonus epilepsy-ataxia syndrome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Revealing the architecture of gene regulation: the promise of eQTL studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: comparison of single base mismatches and base bulges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

The Sun Health Research Institute Brain Donation Program: description and experience, 1987-2007

29 September 2017

1 reference

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Tissue and organ donation for research in forensic pathology: the MRC Sudden Death Brain and Tissue Bank

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

SNPs matter: impact on detection of differential expression.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

Sequence polymorphisms cause many false cis eQTLs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

A survey of genetic human cortical gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627570

4 December 2018

Identifiers

DOI

10.1093/NAR/GKT069

1 reference

16 August 2017

1 reference

16 August 2017

PubMed publication ID

23435227

1 reference