(Q33809385)

English

Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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author name string

Jean-François Lemay

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Guillaume Desnoyers

2

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Europe PubMed Central

PubMed publication ID

29 July 2017

Simon Blouin

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Benoit Heppell

4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Laurène Bastet

5

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Patrick St-Pierre

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Eric Massé

7

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Europe PubMed Central

PubMed publication ID

29 July 2017

Daniel A Lafontaine

8

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Europe PubMed Central

PubMed publication ID

29 July 2017

language of work or name

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publication date

20 January 2011

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Europe PubMed Central

PubMed publication ID

29 July 2017

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Europe PubMed Central

PubMed publication ID

29 July 2017

7

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Europe PubMed Central

PubMed publication ID

29 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

e1001278

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Europe PubMed Central

PubMed publication ID

29 July 2017

copyright license

Creative Commons Attribution 4.0 International

20 January 2011

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April 2022 Public Data File from Crossref

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Folding of a transcriptionally acting preQ1 riboswitch

1 reference

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A NusE:NusG complex links transcription and translation

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Inducible gene expression from the plastid genome by a synthetic riboswitch

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4 July 2018

Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis

1 reference

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4 July 2018

A pH-responsive riboregulator

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4 July 2018

A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

1 reference

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4 July 2018

Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch

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4 July 2018

Structural basis of ligand binding by a c-di-GMP riboswitch

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4 July 2018

Sequence-dependent folding and unfolding of ligand-bound purine riboswitches

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4 July 2018

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

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4 July 2018

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

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RNA-dependent RNA switches in bacteria

1 reference

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4 July 2018

The long and the short of riboswitches.

1 reference

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4 July 2018

The structural and functional diversity of metabolite-binding riboswitches

1 reference

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4 July 2018

Expanding roles for metabolite-sensing regulatory RNAs

1 reference

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4 July 2018

Regulatory RNAs in bacteria

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4 July 2018

Riboswitch RNAs: using RNA to sense cellular metabolism

1 reference

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4 July 2018

Riboswitches: ancient and promising genetic regulators

1 reference

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4 July 2018

Direct observation of hierarchical folding in single riboswitch aptamers

1 reference

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4 July 2018

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

1 reference

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4 July 2018

Ribozymes, riboswitches and beyond: regulation of gene expression without proteins

1 reference

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4 July 2018

Structure and mechanism of a metal-sensing regulatory RNA

1 reference

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4 July 2018

Ligand recognition determinants of guanine riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

RNA regulons: coordination of post-transcriptional events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Conformational changes in the expression domain of the Escherichia coli thiM riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Core requirements of the adenine riboswitch aptamer for ligand binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Folding of the adenine riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

RNA folding during transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

The purine efflux pump PbuE in Bacillus subtilis modulates expression of the PurR and G-box (XptR) regulons by adjusting the purine base pool size

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

1 reference

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4 July 2018

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

1 reference

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4 July 2018

Adenine riboswitches and gene activation by disruption of a transcription terminator

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4 July 2018

Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus

1 reference

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4 July 2018

An mRNA structure in bacteria that controls gene expression by binding lysine

1 reference

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4 July 2018

The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

1 reference

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4 July 2018

Definition of a second Bacillus subtilis pur regulon comprising the pur and xpt-pbuX operons plus pbuG, nupG (yxjA), and pbuE (ydhL).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

An mRNA structure that controls gene expression by binding S-adenosylmethionine

1 reference

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4 July 2018

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3024265

4 July 2018

Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm

1 reference

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4 July 2018

Sensing Small Molecules by Nascent RNA

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4 July 2018

An mRNA structure that controls gene expression by binding FMN

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

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4 July 2018

tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome

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4 July 2018

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4 July 2018

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4 July 2018

Adenosylcobalamin inhibits ribosome binding to btuB RNA

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4 July 2018

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

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4 July 2018

Translational induction of heat shock transcription factor sigma32: evidence for a built-in RNA thermosensor

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4 July 2018

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4 July 2018

2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

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4 July 2018

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4 July 2018

In vivo facilitation of Tetrahymena group I intron splicing in Escherichia coli pre-ribosomal RNA.

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4 July 2018

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4 July 2018

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The kinetics of ligand binding by an adenine-sensing riboswitch

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21 January 2018

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21 January 2018

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21 January 2018

Purification of Bacillus subtilis RNA polymerase and associated factors.

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21 January 2018

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

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Ligand-directed dynamics of adenine riboswitch conformers

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12 December 2020

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https://pubmed.ncbi.nlm.nih.gov/21283784

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNA as a positive regulator of transcription antitermination in B. subtilis

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https://pubmed.ncbi.nlm.nih.gov/21283784

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic intermediates in RNA folding

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https://pubmed.ncbi.nlm.nih.gov/21283784

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

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https://pubmed.ncbi.nlm.nih.gov/21283784

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based on heuristic

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Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1001278

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

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