(Q33816360)

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Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

embryonic stem cell

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author name string

Alexei A Sharov

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Akira Nishiyama

2

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Europe PubMed Central

PubMed publication ID

29 July 2017

Yulan Piao

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Lina S Correa-Cerro

4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Tomokazu Amano

5

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Marshall Thomas

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Samir Mehta

7

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Minoru S H Ko

8

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Europe PubMed Central

PubMed publication ID

29 July 2017

language of work or name

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publication date

9 February 2011

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Europe PubMed Central

PubMed publication ID

29 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

12

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Europe PubMed Central

PubMed publication ID

29 July 2017

102

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-102

0 references

A mini review of MAR-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

SetDB1 contributes to repression of genes encoding developmental regulators and maintenance of ES cell state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Exhaustive search for over-represented DNA sequence motifs with CisFinder

1 reference

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4 July 2018

Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif.

1 reference

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4 July 2018

Mechanisms of transcriptional repression by histone lysine methylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

CpG islands--'a rough guide'.

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4 July 2018

An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Human gene expression sensitivity according to large scale meta-analysis

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4 July 2018

Defining developmental potency and cell lineage trajectories by expression profiling of differentiating mouse embryonic stem cells

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4 July 2018

Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells

1 reference

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4 July 2018

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

1 reference

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4 July 2018

On the nature of human housekeeping genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Stem cell transcriptome profiling via massive-scale mRNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

The ground state of embryonic stem cell self-renewal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Drosophila UTX is a histone H3 Lys27 demethylase that colocalizes with the elongating form of RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Genome-wide assembly and analysis of alternative transcripts in mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Promoter features related to tissue specificity as measured by Shannon entropy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

A web-based tool for principal component and significance analysis of microarray data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

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The nucleosome: from genomic organization to genomic regulation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

GSK-3-selective inhibitors derived from Tyrian purple indirubins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

In Situ-Synthesized Novel Microarray Optimized for Mouse Stem Cell and Early Developmental Expression Profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044670

4 July 2018

Cooperation between complexes that regulate chromatin structure and transcription

1 reference

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4 July 2018

Large-scale analysis of the human and mouse transcriptomes

1 reference

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4 July 2018

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

1 reference

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Crystal structure of an angiogenesis inhibitor bound to the FGF receptor tyrosine kinase domain.

1 reference

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4 July 2018

CpG islands as gene markers in the human genome.

1 reference

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4 July 2018

CisView: a browser and database of cis-regulatory modules predicted in the mouse genome.

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21 January 2018

Inhibition of MAP Kinase Kinase Blocks the Differentiation of PC-12 Cells Induced by Nerve Growth Factor

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-102

21 January 2018

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

1 reference

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12 December 2020

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10.1186/1471-2164-12-102

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Europe PubMed Central

PubMed publication ID

29 July 2017

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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