(Q33824924)

29 July 2017

title

Mechanistic studies of hairpin to duplex conversion for trinucleotide repeat sequences (English)

1 reference

29 July 2017

author name string

Amalia Avila Figueroa

series ordinal

1

1 reference

29 July 2017

Sarah Delaney

series ordinal

2

1 reference

29 July 2017

language of work or name

English

0 references

publication date

11 March 2010

1 reference

Journal of Biological Chemistry

29 July 2017

published in

1 reference

29 July 2017

volume

285

1 reference

29 July 2017

issue

19

1 reference

29 July 2017

page(s)

14648-14657

1 reference

HIV-1 nucleocapsid protein switches the pathway of transactivation response element RNA/DNA annealing from loop-loop "kissing" to "zipper".

29 July 2017

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Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex

4 July 2018

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Catalysis of strand annealing by replication protein A derives from its strand melting properties

4 July 2018

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Huntington's disease: from pathology and genetics to potential therapies

4 July 2018

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Single-stranded DNA-binding protein in vitro eliminates the orientation-dependent impediment to polymerase passage on CAG/CTG repeats

4 July 2018

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Features of trinucleotide repeat instability in vivo

4 July 2018

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Non-B DNA conformations, mutagenesis and disease

4 July 2018

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OGG1 initiates age-dependent CAG trinucleotide expansion in somatic cells

4 July 2018

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DNA structures, repeat expansions and human hereditary disorders.

4 July 2018

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NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site

4 July 2018

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Diseases of unstable repeat expansion: mechanisms and common principles

4 July 2018

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Repeat instability: mechanisms of dynamic mutations

4 July 2018

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Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription

4 July 2018

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(CAG)(n)-hairpin DNA binds to Msh2-Msh3 and changes properties of mismatch recognition

4 July 2018

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Advances in mechanisms of genetic instability related to hereditary neurological diseases

4 July 2018

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Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases

4 July 2018

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The non-Watson-Crick base pairs and their associated isostericity matrices

4 July 2018

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High throughput measurement of duplex, triplex and quadruplex melting curves using molecular beacons and a LightCycler

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

A retroviral RNA kissing complex containing only two G⋅C base pairs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Kinetics of conformational fluctuations in DNA hairpin-loops

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Analysis of strand slippage in DNA polymerase expansions of CAG/CTG triplet repeats associated with neurodegenerative disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Trinucleotide repeats associated with human disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Hairpin formation within the human enkephalin enhancer region. 1. Kinetic analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Trinucleotide repeats that expand in human disease form hairpin structures in vitro

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M109.061853

Structure-dependent DNA damage and repair in a trinucleotide repeat sequence.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M109.061853

Polymorphism of bulged-out residues in HIV-1 RNA DIS kissing complex and structure comparison with solution studies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M109.061853

Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863172

Mechanism of hairpin-duplex conversion for the HIV-1 dimerization initiation site

29 October 2018

1 reference

12 December 2020

Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein

1 reference

12 December 2020

DNA metastability and biological regulation: conformational dynamics of metastable omega-DNA bulge loops

1 reference

12 December 2020

Investigating the mechanism of the nucleocapsid protein chaperoning of the second strand transfer during HIV-1 DNA synthesis

1 reference

12 December 2020

Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes

1 reference

12 December 2020

Optical properties of sixteen dinucleoside phosphates

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

Influence of hairpins on template reannealing at trinucleotide repeat duplexes: a model for slipped DNA

1 reference

12 December 2020

The influence of sequence context and length on the kinetics of DNA duplex formation from complementary hairpins possessing (CNG) repeats

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M109.061853

1 reference

29 July 2017

1 reference

29 July 2017

1 reference