(Q33827523)

29 July 2017

Traces of post-transcriptional RNA modifications in deep sequencing data (English)

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post-transcriptional modification

29 July 2017

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author

Peter F. Stadler

series ordinal

3

1 reference

29 July 2017

David Langenberger

2

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author name string

Sven Findeiss

series ordinal

1

1 reference

PubMed ID

21345160

29 July 2017

Steve Hoffmann

series ordinal

4

1 reference

29 July 2017

24 February 2011

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29 July 2017

1 reference

29 July 2017

392

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29 July 2017

305-313

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29 July 2017

4

1 reference

The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.

29 July 2017

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral MicroRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Effect of 3' terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

U2 small nuclear RNA is a substrate for the CCA-adding enzyme (tRNA nucleotidyltransferase).

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

MODOMICS: a database of RNA modification pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Dynamic isomiR regulation in Drosophila development

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

miR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Hsa-mir-125b-2 is highly expressed in childhood ETV6/RUNX1 (TEL/AML1) leukemias and confers survival advantage to growth inhibitory signals independent of p53

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

The making of tRNAs and more - RNase P and tRNase Z.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Human tRNA-derived small RNAs in the global regulation of RNA silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Structure, dynamics, and function of RNA modification enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Exploration of small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Depletion of human micro-RNA miR-125b reveals that it is critical for the proliferation of differentiated cells but not for the down-regulation of putative targets during differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

RNA-Seq gene expression estimation with read mapping uncertainty

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Adenylation of plant miRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Discovery of microRNAs and other small RNAs in solid tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Identification of modified residues in RNAs by reverse transcription-based methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Evolutionary conservation of post-transcriptional 3' end adenylation of small RNAs: S. cerevisiae signal recognition particle RNA and U2 small nuclear RNA are post-transcriptionally adenylated.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

tRNA biology charges to the front

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

An RNA gene expressed during cortical development evolved rapidly in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Mutation of the methylated tRNA(Lys)(3) residue A58 disrupts reverse transcription and inhibits replication of human immunodeficiency virus type 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

21 January 2018

Evolution of vault RNAs.

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Small RNAs derived from snoRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

tRNA-nucleotidyltransferases: highly unusual RNA polymerases with vital functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Addition of non-genomically encoded nucleotides to the 3'-terminus of maize mitochondrial mRNAs: truncated rps12 mRNAs frequently terminate with CCA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

Methylation as a crucial step in plant microRNA biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2011.043

21 January 2018

Identifiers

DOI

10.1515/BC.2011.043

1 reference

29 July 2017

1 reference

PubMed ID

21345160