(Q33828513)

29 July 2017

title

De-novo discovery of differentially abundant transcription factor binding sites including their positional preference (English)

1 reference

29 July 2017

3

1 reference

29 July 2017

Jens Keilwagen

1

0 references

author name string

Jan Grau

2

1 reference

29 July 2017

Stefan Posch

4

1 reference

29 July 2017

Marc Strickert

5

1 reference

29 July 2017

Ivo Grosse

6

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29 July 2017

publication date

10 February 2011

1 reference

PLOS Computational Biology

29 July 2017

published in

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29 July 2017

volume

7

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29 July 2017

issue

2

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29 July 2017

page(s)

e1001070

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Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

10 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037384

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

28 July 2018

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Accurate splice site prediction using support vector machines

28 July 2018

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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

28 July 2018

1 reference

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A universal framework for regulatory element discovery across all genomes and data types

28 July 2018

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Discriminative motif discovery in DNA and protein sequences using the DEME algorithm

28 July 2018

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28 July 2018

Auxin response factors

1 reference

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Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions

28 July 2018

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Genome-wide mapping of in vivo protein-DNA interactions

28 July 2018

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The Gibbs Centroid Sampler

28 July 2018

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Auxin in action: signalling, transport and the control of plant growth and development

28 July 2018

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ChIP-chip comes of age for genome-wide functional analysis

28 July 2018

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Identifying tissue-selective transcription factor binding sites in vertebrate promoters

28 July 2018

1 reference

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Assessing computational tools for the discovery of transcription factor binding sites

28 July 2018

1 reference

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Transcriptional regulatory code of a eukaryotic genome

28 July 2018

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Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA.

28 July 2018

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Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila

28 July 2018

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The evolution of transcriptional regulation in eukaryotes

28 July 2018

1 reference

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Genomics, gene expression and DNA arrays

28 July 2018

1 reference

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

28 July 2018

1 reference

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ARF1, a transcription factor that binds to auxin response elements

28 July 2018

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28 July 2018

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

28 July 2018

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

28 July 2018

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Sequence logos: a new way to display consensus sequences

28 July 2018

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DNAase footprinting a simple method for the detection of protein-DNA binding specificity

28 July 2018

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Gibbs Recursive Sampler: finding transcription factor binding sites

28 July 2018

1 reference

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Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

Improved benchmarks for computational motif discovery

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

ARTS: accurate recognition of transcription starts in human.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

Comprehensive transcriptome analysis of auxin responses in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

Dimerization and DNA binding of auxin response factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

An algorithm for finding signals of unknown length in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001070

Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21347314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1001070

1 reference

journals/ploscb/KeilwagenGPPSG11

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

29 July 2017

1 reference