(Q33830667)

29 July 2017

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations (English)

1 reference

29 July 2017

Shewanella oneidensis

Shewanella oneidensis

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3

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29 July 2017

4

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19

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29 July 2017

1

Eugene Kolker

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Dwayne A Elias

Dwayne A Elias

14

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Samuel Owen Purvine

Samuel Purvine

25

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Frank R. Collart

Frank R Collart

34

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Richard D. Smith

Richard D Smith

36

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James M. Tiedje

40

James M Tiedje

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29 July 2017

6

Kira S Makarova

1 reference

Konstantinos T. Konstantinidis

29 July 2017

18

Konstantinos T Konstantinidis

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29 July 2017

23

Ljiljana Pasa-Tolic

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29 July 2017

30

Jizhong Zhou

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29 July 2017

38

Kenneth H Nealson

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29 July 2017

37

Carol S Giometti

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29 July 2017

31

Frank W Larimer

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29 July 2017

12

Alex S Beliaev

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29 July 2017

15

Yuri A Gorby

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29 July 2017

39

James K Fredrickson

1 reference

29 July 2017

26

Margrethe H Serres

1 reference

29 July 2017

20

Mary S Lipton

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29 July 2017

Alex F Picone

2

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29 July 2017

Roger Higdon

5

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29 July 2017

Natali Kolker

7

1 reference

29 July 2017

Gordon A Anderson

8

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29 July 2017

Xiaoyun Qiu

9

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29 July 2017

Kenneth J Auberry

10

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29 July 2017

Gyorgy Babnigg

11

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29 July 2017

Paul Edlefsen

13

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29 July 2017

Ted Holzman

16

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29 July 2017

Joel A Klappenbach

17

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29 July 2017

Lee-Ann McCue

21

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29 July 2017

Matthew Monroe

22

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29 July 2017

Grigoriy Pinchuk

24

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29 July 2017

Sasha Tsapin

27

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29 July 2017

Brian A Zakrajsek

28

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29 July 2017

Wenhong Zhu

29

1 reference

29 July 2017

Charles E Lawrence

32

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29 July 2017

Monica Riley

33

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29 July 2017

John R Yates

35

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29 July 2017

language of work or name

English

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publication date

31 January 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

102

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29 July 2017

6

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29 July 2017

2099-2104

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Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Survival of Shewanella oneidensis MR-1 after UV radiation exposure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

'Conserved hypothetical' proteins: prioritization of targets for experimental study

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

CD-Search: protein domain annotations on the fly

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

The Protein Data Bank and lessons in data management

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Bacterial signal transduction network in a genomic perspective

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Standard mixtures for proteome studies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Identification of 42 possible cytochrome C genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Statistical analysis of global gene expression data: some practical considerations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Identifying protein function--a call for community action

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Environmental genome shotgun sequencing of the Sargasso Sea

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Trends between gene content and genome size in prokaryotic species with larger genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

What We Have Learned about Prokaryotes from Structural Genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Scaling laws in the functional content of genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

CDD: a curated Entrez database of conserved domain alignments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

The InterPro database, 2003 brings increased coverage and new features

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

The Pfam protein families database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Powers and pitfalls in sequence analysis: the 70% hurdle

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

A genomic perspective on protein families

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548307

Realizing the Potential of the Genome Revolution: The Genomes to Life Program

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0409111102

Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0409111102

Analysis of the Shewanella oneidensis proteome by two‐dimensional gel electrophoresis under nondenaturing conditions

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0409111102

Completing the E. coli proteome: a database of gene products characterised since the completion of the genome sequence

21 January 2018

1 reference

12 December 2020

Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor

1 reference

12 December 2020

Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome

1 reference

12 December 2020

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

1 reference

12 December 2020

HOBACGEN: homologous bacterial genes database

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409111102

1 reference

29 July 2017

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1 reference

29 July 2017

1 reference