(Q33833493)

29 July 2017

title

Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome (English)

1 reference

29 July 2017

1 reference

Chen X

1

1 reference

29 July 2017

Su Z

2

1 reference

29 July 2017

Dam P

3

1 reference

29 July 2017

Palenik B

4

1 reference

29 July 2017

Xu Y

5

1 reference

29 July 2017

Jiang T

6

1 reference

29 July 2017

language of work or name

English

0 references

publication date

19 April 2004

1 reference

29 July 2017

published in

Nucleic Acids Research

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29 July 2017

volume

32

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29 July 2017

issue

7

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29 July 2017

page(s)

2147-2157

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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

The genome of a motile marine Synechococcus

4 July 2018

1 reference

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Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

4 July 2018

1 reference

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Computational identification of operons in microbial genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Co-expression pattern from DNA microarray experiments as a tool for operon prediction

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Prediction of operons in microbial genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

The COG database: new developments in phylogenetic classification of proteins from complete genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Prediction of transcription terminators in bacterial genomes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Operons in Escherichia coli: genomic analyses and predictions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

DNA binding sites: representation and discovery

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Recognition of regulatory sites by genomic comparison.

4 July 2018

1 reference

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The use of gene clusters to infer functional coupling

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

A genomic perspective on protein families

4 July 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

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SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements

4 July 2018

1 reference

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New developments of a transcription factors database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

ABC Transporters: From Microorganisms to Man

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407844

Gene order is not conserved in bacterial evolution

4 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15096577

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Computational inference of regulatory pathways in microbes: an application to phosphorus assimilation pathways in Synechococcus sp. WH8102

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15096577

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH510

1 reference

29 July 2017

1 reference

29 July 2017

1 reference