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Recognition of regulatory sites by genomic comparison.
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1 reference
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Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
review article
1 reference
stated in
Europe PubMed Central
title
Recognition of regulatory sites by genomic comparison
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
author
Mikhail Gelfand
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
author name string
Gelfand MS
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
retrieved
29 July 2017
publication date
1 November 1999
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
published in
Research in Microbiology
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
volume
150
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
issue
9-10
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
page(s)
755-771
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
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Selection of DNA binding sites by regulatory proteins: the LexA protein and the arginine repressor use different strategies for functional specificity
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Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches
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Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement.
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Critical comparison of consensus methods for molecular sequences
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Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli
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Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
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The Molecular Cloning and Characterization of BM1P1 and BM1P2 Proteins, Putative Positive Transcription Factors Involved in Barbiturate-mediated Induction of the Genes Encoding Cytochrome P450BM-1 of Bacillus megaterium
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Computer analysis of distribution of putative cis- and trans-regulatory elements in milk protein gene promoters.
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Identification of conserved potentially regulatory sequences of the SRY gene from 10 different species of mammals.
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Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Negative regulation of bacterial heat shock genes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A novel DNA element that controls bacterial heat shock gene expression.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Definition of a consensus DNA-binding site for the Escherichia coli pleiotropic regulatory protein, FruR.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Training back-propagation neural networks to define and detect DNA-binding sites
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The use of gene clusters to infer functional coupling
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Phenobarbital induction mediated by a distal CYP2B2 sequence in rat liver transiently transfected in situ
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genomic position analyses and the transcription machinery.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Is the dnaA promoter region in Escherichia coli an evolutionary junkyard of physiologically insignificant regulatory elements?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The density of transcriptional elements in promoter and non-promoter sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The pst operon of Bacillus subtilis has a phosphate-regulated promoter and is involved in phosphate transport but not in regulation of the pho regulon
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A single-base-pair mutation changes the specificities of both a transcription activation protein and its binding site.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conservation of the expression and function of apterous orthologs in Drosophila and mammals
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of a Caulobacter crescentus operon encoding hrcA, involved in negatively regulating heat-inducible transcription, and the chaperone gene grpE.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Transcriptional activation by FNR and CRP: reciprocity of binding-site recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Information content of binding sites on nucleotide sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Information content of individual genetic sequences.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
hrcA, the first gene of the Bacillus subtilis dnaK operon encodes a negative regulator of class I heat shock genes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Selective conservation of an E-protein gene promoter during vertebrate evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Evidence against the Bm1P1 protein as a positive transcription factor for barbiturate-mediated induction of cytochrome P450BM-1 in bacillus megaterium
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sequences required for regulation of arginine biosynthesis promoters are conserved between Bacillus subtilis and Escherichia coli.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of evolutionarily invariant sequences in the protein C gene promoter
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computer methods to locate signals in nucleic acid sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifying protein-binding sites from unaligned DNA fragments
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Information content and free energy in DNA--protein interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Review: compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A flexible partnership: the CytR anti-activator and the cAMP-CRP activator protein, comrades in transcription control
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Co-amplification explains linkage disequilibrium of two mosquito esterase genes in insecticide-resistant Culex quinquefasciatus
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A computational genomics approach to the identification of gene networks
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of regulatory regions which confer muscle-specific gene expression.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pattern recognition in several sequences: consensus and alignment.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Expression, purification, and functional analysis of the TyrR protein of Haemophilus influenzae.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
CIRCE, a novel heat shock element involved in regulation of heat shock operon dnaK of Bacillus subtilis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Potential regulatory elements of nematode vitellogenin genes revealed by interspecies sequence comparison.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900117-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0923-2508(99)00117-5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
PubMed publication ID
10673013
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10673013
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10673013%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
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