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The quest to deduce protein function from sequence: the role of pattern databases.
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
review article
1 reference
stated in
Europe PubMed Central
title
The quest to deduce protein function from sequence: the role of pattern databases
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
author
Terri Attwood
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
Terri Attwood
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Attwood TK
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
retrieved
29 July 2017
publication date
1 February 2000
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
published in
International Journal of Biochemistry & Cell Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
volume
32
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
page(s)
139-155
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
issue
2
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
cites work
Financing a future for public biological data
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
The PIR-International Protein Sequence Database
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Systematic functional analysis of the yeast genome
1 reference
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Crossref
reference URL
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retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein annotation: detective work for function prediction.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Empirical statistical estimates for sequence similarity searches.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Highly specific protein sequence motifs for genome analysis
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Crossref
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https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Amino acid substitution matrices from protein blocks
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Profile analysis: detection of distantly related proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Improving the sensitivity of the sequence profile method
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The PROSITE database, its status in 1999
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
New features of the Blocks Database servers
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Finding sequence motifs in groups of functionally related proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
PRINTS prepares for the new millennium.
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Recent improvements of the ProDom database of protein domain families
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
The Protein Data Bank: a computer-based archival file for macromolecular structures
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
SRS: information retrieval system for molecular biology data banks
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Crossref
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https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Database of protein sequence alignments: PIR-ALN
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
MIPS: a database for genomes and protein sequences.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
A comprehensive set of sequence analysis programs for the VAX
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
ProClass Protein Family Database.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DOMO: a new database of aligned protein domains
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Entrez: molecular biology database and retrieval system
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Connecting protein family resources using the proWeb network
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1357-2725%2899%2900106-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S1357-2725(99)00106-5
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
PubMed ID
10687950
1 reference
stated in
Europe PubMed Central
PubMed ID
10687950
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10687950%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
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