(Q33849501)

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ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

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scholarly article

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Europe PubMed Central

29 July 2017

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Europe PubMed Central

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry (English)

1 reference

Europe PubMed Central

29 July 2017

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6

object named as

Paola Picotti

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Europe PubMed Central

29 July 2017

Ruedi Aebersold

12

object named as

Ruedi Aebersold

1 reference

Europe PubMed Central

29 July 2017

9

object named as

Eric W Deutsch

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Europe PubMed Central

29 July 2017

Ulrike Kusebauch

7

object named as

Ulrike Kusebauch

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Europe PubMed Central

29 July 2017

author name string

Mi-Youn K Brusniak

1

1 reference

Europe PubMed Central

29 July 2017

Sung-Tat Kwok

2

1 reference

Europe PubMed Central

29 July 2017

Mark Christiansen

3

1 reference

Europe PubMed Central

29 July 2017

David Campbell

4

1 reference

Europe PubMed Central

29 July 2017

Lukas Reiter

5

1 reference

Europe PubMed Central

29 July 2017

Hector Ramos

8

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Europe PubMed Central

29 July 2017

Jingchun Chen

10

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Europe PubMed Central

29 July 2017

Robert L Moritz

11

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Europe PubMed Central

29 July 2017

publication date

18 March 2011

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29 July 2017

BMC Bioinformatics

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29 July 2017

12

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29 July 2017

78

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Europe PubMed Central

29 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

18 March 2011

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April 2022 Public Data File from Crossref

copyright status

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April 2022 Public Data File from Crossref

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-78

0 references

TraML--a standard format for exchange of selected reaction monitoring transition lists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

mProphet: automated data processing and statistical validation for large-scale SRM experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Options and considerations when selecting a quantitative proteomics strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

A human proteome detection and quantitation project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

A database of mass spectrometric assays for the yeast proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Selected reaction monitoring for quantitative proteomics: a tutorial

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Patterns of somatic mutation in human cancer genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

The Gaggle: an open-source software system for integrating bioinformatics software and data sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213215

5 July 2018

Computational prediction of proteotypic peptides for quantitative proteomics.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-78

21 January 2018

Identifiers

10.1186/1471-2105-12-78

1 reference

Europe PubMed Central

29 July 2017

DBLP publication ID

journals/bmcbi/BrusniakKCCRPKRDCMA11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

ResearchGate publication ID

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