(Q33856438)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

5

1 reference

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26 January 2020

author name string

Thomas Ferenci

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Heloisa Filus Galbiati

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Thu Betteridge

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Katherine Phan

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

publication date

25 March 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

page(s)

62

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2180-11-62

26 January 2020

exact match

0 references

cites work

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Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12

5 July 2018

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5 July 2018

(p)ppGpp: still magical?

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Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio

5 July 2018

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5 July 2018

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5 July 2018

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

5 July 2018

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5 July 2018

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Comparative genomic hybridization and physiological characterization of environmental isolates indicate that significant (eco-)physiological properties are highly conserved in the species Escherichia coli.

5 July 2018

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Regulation of the stringent response is the essential function of the conserved bacterial G protein CgtA in Vibrio cholerae

5 July 2018

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The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.

5 July 2018

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Transcriptional regulatory networks in bacteria: from input signals to output responses.

5 July 2018

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Functional heterogeneity of RpoS in stress tolerance of enterohemorrhagic Escherichia coli strains

5 July 2018

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New horizons for (p)ppGpp in bacterial and plant physiology.

5 July 2018

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Characterization of enterohemorrhagic Escherichia coli strains based on acid resistance phenotypes

5 July 2018

1 reference

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Maintaining a healthy SPANC balance through regulatory and mutational adaptation

5 July 2018

1 reference

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Variation in acid resistance among shiga toxin-producing clones of pathogenic Escherichia coli

5 July 2018

1 reference

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ppGpp: a global regulator in Escherichia coli.

5 July 2018

1 reference

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Expression of fnr is constrained by an upstream IS5 insertion in certain Escherichia coli K-12 strains

5 July 2018

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Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity

5 July 2018

1 reference

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Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes

5 July 2018

1 reference

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Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?

5 July 2018

1 reference

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A stop codon-dependent internal secondary translation initiation region in Escherichia coli rpoS.

5 July 2018

1 reference

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A regulatory trade-off as a source of strain variation in the species Escherichia coli

5 July 2018

1 reference

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Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

5 July 2018

1 reference

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Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

5 July 2018

1 reference

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Genomic variability among enteric pathogens: the case of the mutS-rpoS intergenic region

5 July 2018

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Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase

5 July 2018

1 reference

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5 July 2018

1 reference

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DksA affects ppGpp induction of RpoS at a translational level

5 July 2018

1 reference

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Regulation of sigma factor competition by the alarmone ppGpp

5 July 2018

1 reference

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rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

5 July 2018

1 reference

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An Escherichia coli reference collection group B2- and uropathogen-associated polymorphism in the rpoS-mutS region of the E. coli chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Promiscuous origin of a chimeric sequence in the Escherichia coli O157:H7 genome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Characterization of the acid resistance phenotype and rpoS alleles of shiga-like toxin-producing Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Guanosine 3',5'-bispyrophosphate (ppGpp) synthesis in cells of Escherichia coli starved for Pi.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Standard reference strains of Escherichia coli from natural populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Two Compounds implicated in the Function of the RC Gene of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Characterization of the relA1 mutation and a comparison of relA1 with new relA null alleles in Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Simple downshift and resulting lack of correlation between ppGpp pool size and ribonucleic acid accumulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-62

Characterisation of the allelic variation in the rpoS gene in thirteen K12 and six other non-pathogenic Escherichia coli strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-62

ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-62

Alkaline phosphatase as a reporter of sigma(S) levels and rpoS polymorphisms in different E. coli strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-11-62

Functional organisation of Escherichia coli transcriptional regulatory network

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Guanosine tetraphosphate inhibits protein synthesis in vivo. A possible protective mechanism for starvation stress in Escherichia coli

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074542

Sensing nutrient levels in bacteria

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21439067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RpoS-dependent promoters require guanosine tetraphosphate for induction even in the presence of high levels of sigma(s)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21439067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genetic requirements for growth of Escherichia coli K12 on methyl-alpha-D-glucopyranoside and the five alpha-D-glucosyl-D-fructose isomers of sucrose

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21439067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2180-11-62

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21439067%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference