(Q33863624)

29 July 2017

title

Named entity recognition for bacterial Type IV secretion systems (English)

1 reference

29 July 2017

main subject

named-entity recognition

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7

Sampo Pyysalo

1 reference

29 July 2017

1

Sophia Ananiadou

1 reference

29 July 2017

Dan Sullivan

2

1 reference

29 July 2017

William Black

3

1 reference

29 July 2017

Gina-Anne Levow

4

1 reference

29 July 2017

Joseph J Gillespie

5

1 reference

29 July 2017

Chunhong Mao

6

1 reference

29 July 2017

Balakrishna Kolluru

8

1 reference

29 July 2017

Junichi Tsujii

9

1 reference

29 July 2017

Bruno Sobral

10

1 reference

29 July 2017

language of work or name

English

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publication date

29 March 2011

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29 July 2017

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29 July 2017

volume

6

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29 July 2017

issue

3

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29 July 2017

page(s)

e14780

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Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

29 March 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Phylogenomics reveals a diverse Rickettsiales type IV secretion system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Biological diversity of prokaryotic type IV secretion systems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

The structural biology of type IV secretion systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Controlled vocabularies for microbial virulence factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

An anomalous type IV secretion system in Rickettsia is evolutionarily conserved

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Legionella pneumophila Dot/Icm translocated substrates: a sum of parts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

How to make the most of NE dictionaries in statistical NER.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

BioCaster: detecting public health rumors with a Web-based text mining system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Protein subassemblies of the Helicobacter pylori Cag type IV secretion system revealed by localization and interaction studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

The type IV secretion system of Sinorhizobium meliloti strain 1021 is required for conjugation but not for intracellular symbiosis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Novel type IV secretion system involved in propagation of genomic islands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Automated recognition of malignancy mentions in biomedical literature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Building an abbreviation dictionary using a term recognition approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Text mining and its potential applications in systems biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Agropine in "null-type" crown gall tumors: Evidence for generality of the opine concept

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Biogenesis, architecture, and function of bacterial type IV secretion systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

GoPubMed: exploring PubMed with the Gene Ontology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Overview of BioCreAtIvE: critical assessment of information extraction for biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

The Icm/Dot type-IV secretion systems of Legionella pneumophila and Coxiella burnetii

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Biomedical named entity recognition using two-phase model based on SVMs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

The versatile bacterial type IV secretion systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

F factor conjugation is a true type IV secretion system.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

The transfer of DNA from agrobacterium tumefaciens into plants: a feast of fundamental insights

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066171

Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

What makes a gene name? Named entity recognition in the biomedical literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

Two-phase biomedical named entity recognition using CRFs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

A multilingual ontology for infectious disease surveillance: rationale, design and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

Introduction to the bio-entity recognition task at JNLPBA

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014780

10.1371/JOURNAL.PONE.0014780

21 January 2018

Identifiers

DOI

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29 July 2017

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29 July 2017

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