(Q33868778)

29 July 2017

title

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species (English)

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29 July 2017

main subject

whole genome sequencing

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5

James M Tiedje

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Konstantinos T. Konstantinidis

29 July 2017

6

object named as

Konstantinos T Konstantinidis

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29 July 2017

Chengwei Luo

1

1 reference

29 July 2017

Seth T Walk

2

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29 July 2017

David M Gordon

3

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29 July 2017

Michael Feldgarden

4

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29 July 2017

language of work or name

English

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publication date

11 April 2011

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

108

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29 July 2017

issue

17

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29 July 2017

page(s)

7200-7205

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maintained by WikiProject

29 July 2017

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Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Viruses in the faecal microbiota of monozygotic twins and their mothers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Phylogenetic incongruence arising from fragmented speciation in enteric bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

A human gut microbial gene catalogue established by metagenomic sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Cryptic lineages of the genus Escherichia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Clustal W and Clustal X version 2.0

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Genetic exchange across a species boundary in the archaeal genus ferroplasma

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Recombination and the nature of bacterial speciation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

The bacterial species definition in the genomic era.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Sex and virulence in Escherichia coli: an evolutionary perspective

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Opinion: Re-evaluating prokaryotic species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

When does a clone deserve a name? A perspective on bacterial species based on population genetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

The species concept for prokaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Amelioration of bacterial genomes: rates of change and exchange

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

28 July 2018

2 references

https://api.crossref.org/works/10.1073%2FPNAS.1015622108

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

Fuzzy species among recombinogenic bacteria

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015622108

Carbon nutrition of Escherichia coli in the mouse intestine

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015622108

Temporal fragmentation of speciation in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1015622108

A codon-based model of nucleotide substitution for protein-coding DNA sequences

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084108

29 October 2018

Identifiers

DOI

10.1073/PNAS.1015622108

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29 July 2017

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29 July 2017

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