(Q33875171)

English

Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses.

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21498757%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21498757%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

natural product

1 reference

based on heuristic

inferred from title

actinorhizal plant

1 reference

based on heuristic

inferred from title

object named as

frankia

1 reference

based on heuristic

inferred from title

Jaclyn M. Winter

6

1 reference

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28 January 2020

Benjamin R Clark

10

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28 January 2020

Alessandra S Eustáquio

12

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28 January 2020

Micheal C Wilson

26

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28 January 2020

27

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28 January 2020

Bradley S. Moore

29

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28 January 2020

William H. Gerwick

15

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William H Gerwick

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28 January 2020

Pieter C. Dorrestein

28

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Pieter C Dorrestein

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28 January 2020

Daniel W Udwary

1

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Daniel W Udwary

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28 January 2020

David J. Gonzalez

16

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David Gonzalez

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28 January 2020

14

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Lena Gerwick

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28 January 2020

Eduardo Esquenazi

11

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Eduardo Esquenazi

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28 January 2020

Joshawna K Nunnery

21

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Joshawna K Nunnery

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28 January 2020

author name string

Erin A Gontang

2

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28 January 2020

Adam C Jones

3

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28 January 2020

Carla S Jones

4

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28 January 2020

Andrew W Schultz

5

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28 January 2020

Jane Y Yang

7

1 reference

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28 January 2020

Nicholas Beauchemin

8

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28 January 2020

Todd L Capson

9

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28 January 2020

Kelle Freel

13

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28 January 2020

Wei-Ting Liu

17

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28 January 2020

Karla L Malloy

18

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28 January 2020

Katherine N Maloney

19

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28 January 2020

Markus Nett

20

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28 January 2020

Alejandra Prieto-Davo

23

1 reference

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28 January 2020

Thomas L Simmons

24

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28 January 2020

Sara Weitz

25

1 reference

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28 January 2020

Kevin Penn

22

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28 January 2020

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publication date

15 April 2011

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28 January 2020

Applied and Environmental Microbiology

1 reference

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28 January 2020

77

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28 January 2020

11

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28 January 2020

3617-3625

1 reference

Europe PubMed Central

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28 January 2020

The biosynthesis of 3-amino-5-hydroxybenzoic acid (AHBA), the precursor of mC7N units in ansamycin and mitomycin antibiotics: a review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

The Frankia alni symbiotic transcriptome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Genomic basis for natural product biosynthetic diversity in the actinomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Diminished exoproteome of Frankia spp. in culture and symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Recent advances in siderophore biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Biosynthesis of 2-hydroxyethylphosphonate, an unexpected intermediate common to multiple phosphonate biosynthetic pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

SymRK defines a common genetic basis for plant root endosymbioses with arbuscular mycorrhiza fungi, rhizobia, and Frankiabacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Comparative secretome analysis suggests low plant cell wall degrading capacity in Frankia symbionts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

The enduracidin biosynthetic gene cluster from Streptomyces fungicidicus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Genetic characterization of the chlorothricin gene cluster as a model for spirotetronate antibiotic biosynthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Differences in fatty acid composition between vegetative cells and N(2)-fixing vesicles of Frankia sp. strain CpI1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Bioactive microbial metabolites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Dissecting the mechanism and assembly of a complex virulence mycobacterial lipid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

CDD: a Conserved Domain Database for protein classification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Vancomycin assembly: nature's way.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Hopanoid lipids compose the Frankia vesicle envelope, presumptive barrier of oxygen diffusion to nitrogenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Novel methylated triterpenoids of the gammacerane series from the nitrogen-fixing bacterium Bradyrhizobium japonicum USDA 110.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Biology of Frankia strains, actinomycete symbionts of actinorhizal plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

28 July 2018

Temporal dynamics of natural product biosynthesis in marine cyanobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Auxin carriers localization drives auxin accumulation in plant cells infected by Frankia in Casuarina glauca actinorhizal nodules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Differential effects of rare specific flavonoids on compatible and incompatible strains in the Myrica gale-Frankia actinorhizal symbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Chapter 13. Nonribosomal peptide synthetases mechanistic and structural aspects of essential domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Biosynthetic gene cluster of cetoniacytone A, an unusual aminocyclitol from the endosymbiotic Bacterium Actinomyces sp. Lu 9419.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

The implication of life style on codon usage patterns and predicted highly expressed genes for three Frankia genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Glyceryl-S-acyl carrier protein as an intermediate in the biosynthesis of tetronate antibiotics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Low-molecular-weight post-translationally modified microcins.

1 reference

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29 October 2018

Oxidative phenol coupling reactions catalyzed by OxyB: a cytochrome P450 from the vancomycin producing organism. implications for vancomycin biosynthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Small molecules: the lexicon of biodiversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Novel hopanoids from Frankia spp. and related soil bacteria. Squalene cyclization and significance of geological biomarkers revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Hopanoid lipids in Frankia: identification of squalene-hopene cyclase gene sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Production of polyunsaturated fatty acids by polyketide synthases in both prokaryotes and eukaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

High hopanoid/total lipids ratio in Frankia mycelia is not related to the nitrogen status

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Cloning of conserved genes from Zymomonas mobilis and Bradyrhizobium japonicum that function in the biosynthesis of hopanoid lipids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127629

29 October 2018

Polyoxypeptins A and B Produced by Streptomyces: Apoptosis-Inducing Cyclic Depsipeptides Containing the Novel Amino Acid (2S,3R)-3-Hydroxy-3-methylproline

1 reference

https://pubmed.ncbi.nlm.nih.gov/21498757

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mining microbial genomes for new natural products and biosynthetic pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/21498757

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyketide versatility in the biosynthesis of complex mycobacterial cell wall lipids

1 reference

https://pubmed.ncbi.nlm.nih.gov/21498757

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.00038-11

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21498757%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

Europe PubMed Central

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28 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21498757%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

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