(Q33881396)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

title

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities (English)

1 reference

30 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Jarkko Toivonen

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

3

1 reference

30 January 2020

Gonghong Wei

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

5

1 reference

30 January 2020

Martin Enge

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

6

1 reference

30 January 2020

Juan M. Vaquerizas

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

8

1 reference

30 January 2020

Jian Yan

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

9

1 reference

30 January 2020

Mikko J Sillanpää

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

10

1 reference

30 January 2020

Kimmo Palin

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

12

1 reference

30 January 2020

Esko Ukkonen

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

16

1 reference

30 January 2020

author name string

Teemu Kivioja

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

2

1 reference

30 January 2020

Lu Cheng

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

4

1 reference

30 January 2020

Mikko Taipale

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

7

1 reference

30 January 2020

Martin Bonke

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

11

1 reference

30 January 2020

Shaheynoor Talukder

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

13

1 reference

30 January 2020

Timothy R Hughes

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

14

1 reference

30 January 2020

Nicholas M Luscombe

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

15

1 reference

30 January 2020

Jussi Taipale

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

publication date

8 April 2010

1 reference

30 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

volume

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

page(s)

861-873

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20378718%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

6

1 reference

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

30 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Inferring binding energies from selected binding sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Diversity and complexity in DNA recognition by transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Histone modifications at human enhancers reflect global cell-type-specific gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

A census of human transcription factors: function, expression and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Blimp-1/PRDM1 mediates transcriptional suppression of the NLR gene NLRP12/Monarch-1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

A dimer-specific function of the transcription factor NFATp

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Species-specific transcription in mice carrying human chromosome 21

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Advances in SELEX and application of aptamers in the central nervous system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

High-throughput assay for determining specificity and affinity of protein-DNA binding interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

NFAT proteins: key regulators of T-cell development and function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Human ORFeome version 1.1: a platform for reverse proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

A biophysical approach to transcription factor binding site discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

An asymmetric NFAT1 dimer on a pseudo-palindromic kappa B-like DNA site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Additivity in protein-DNA interactions: how good an approximation is it?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The helix-loop-helix transcription factor SEF-2 regulates the activity of a novel initiator element in the promoter of the human somatostatin receptor II gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The basic domain/leucine zipper protein hXBP-1 preferentially binds to and transactivates CRE-like sequences containing an ACGT core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Identification of AML-1 and the (8;21) translocation protein (AML-1/ETO) as sequence-specific DNA-binding proteins: the runt homology domain is required for DNA binding and protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Multiple parameters control the selectivity of nuclear receptors for their response elements. Selectivity and promiscuity in response element recognition by retinoic acid receptors and retinoid X receptors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

DNA-binding specificity of GATA family transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Selection of new HSF1 and HSF2 DNA-binding sites reveals difference in trimer cooperativity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The GLI gene encodes a nuclear protein which binds specific sequences in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

TFEB has DNA-binding and oligomerization properties of a unique helix-loop-helix/leucine-zipper family

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

5 July 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Cell-type specific activity of two glucocorticoid responsive units of rat tyrosine aminotransferase gene is associated with multiple binding sites for C/EBP and a novel liver-specific nuclear factor

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Use of gel retardation to analyze protein-nucleic acid interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The DNA binding specificity of the bipartite POU domain and its subdomains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877582

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20378718