(Q35008732)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

author name string

Artem Zykovich

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Ian Korf

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

language of work or name

English

0 references

publication date

1 December 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

volume

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

issue

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

page(s)

e151

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

Diversity and complexity in DNA recognition by transcription factors

10 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Zinc-finger nucleases: the next generation emerges

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Critical parameters for genome editing using zinc finger nucleases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Genome-wide mapping of in vivo protein-DNA interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Structure-based prediction of C2H2 zinc-finger binding specificity: sensitivity to docking geometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Ab initio prediction of transcription factor targets using structural knowledge

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

DNA-binding specificity of NGFI-A and related zinc finger transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794170

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP802

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP802

Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP802

ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP802

Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP802

Multiconnection of identical zinc finger: implication for DNA binding affinity and unit modulation of the three zinc finger domain

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19843614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19843614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP802

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19843614%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

19843614

1 reference