(Q33883813)

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Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions

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scholarly article

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Europe PubMed Central

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29 July 2017

Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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Herbert Kuster

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Alexandra Trkola

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Alexandra Trkola

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Huldrych F Günthard

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Huldrych F Günthard

14

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Swiss HIV Cohort Study

15

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Swiss HIV Cohort Study

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29 July 2017

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Jürg Böni

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29 July 2017

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David A Price

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Bernard Hirschel

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Bernard Hirschel

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29 July 2017

Annette Oxenius

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Annette Oxenius

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29 July 2017

5

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Peter Rusert

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29 July 2017

author name string

Beda Joos

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29 July 2017

Marek Fischer

3

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29 July 2017

Christine Leemann

6

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29 July 2017

Rodney E Phillips

10

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29 July 2017

Joseph K Wong

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29 July 2017

Rainer Weber

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29 July 2017

publication date

1 July 2005

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29 July 2017

Journal of Virology

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29 July 2017

79

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Europe PubMed Central

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29 July 2017

14

1 reference

Europe PubMed Central

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29 July 2017

9026-9037

1 reference

Europe PubMed Central

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29 July 2017

Virus isolates during acute and chronic human immunodeficiency virus type 1 infection show distinct patterns of sensitivity to entry inhibitors

1 reference

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Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy.

1 reference

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Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response

1 reference

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Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1

1 reference

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Pervasive genomic recombination of HIV-1 in vivo

1 reference

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Quantifiable cytotoxic T lymphocyte responses and HLA-related risk of progression to AIDS

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Relative replication fitness of multi-nucleoside analogue-resistant HIV-1 strains bearing a dipeptide insertion in the fingers subdomain of the reverse transcriptase and mutations at codons 67 and 215.

1 reference

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28 July 2018

Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes

1 reference

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28 July 2018

Passive immunotherapy in simian immunodeficiency virus-infected macaques accelerates the development of neutralizing antibodies

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Comprehensive analysis of human immunodeficiency virus type 1-specific CD4 responses reveals marked immunodominance of gag and nef and the presence of broadly recognized peptides

1 reference

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Immediate cytotoxicity but not degranulation distinguishes effector and memory subsets of CD8+ T cells

1 reference

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28 July 2018

Human immunodeficiency virus type 1 fitness is a determining factor in viral rebound and set point in chronic infection

1 reference

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Infection with Multiple Human Immunodeficiency Virus Type 1 Variants Is Associated with Faster Disease Progression

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Advantage of rare HLA supertype in HIV disease progression

1 reference

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28 July 2018

Comprehensive analysis of human immunodeficiency virus type 1 (HIV-1)-specific gamma interferon-secreting CD8+ T cells in primary HIV-1 infection

1 reference

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Heterogeneous clearance rates of long-lived lymphocytes infected with HIV: intrinsic stability predicts lifelong persistence

1 reference

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28 July 2018

Antibody neutralization and escape by HIV-1

1 reference

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28 July 2018

Impact of clade diversity on HIV-1 virulence, antiretroviral drug sensitivity and drug resistance

1 reference

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The influence of HLA genotype on AIDS

1 reference

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28 July 2018

Stimulation of HIV-specific cellular immunity by structured treatment interruption fails to enhance viral control in chronic HIV infection

1 reference

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Intrapatient diversity and its correlation with viral setpoint in human immunodeficiency virus type 1 CRF02_A/G-IbNG infection

1 reference

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Residual cell-associated unspliced HIV-1 RNA in peripheral blood of patients on potent antiretroviral therapy represents intracellular transcripts.

1 reference

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28 July 2018

Nelfinavir-resistant, amprenavir-hypersusceptible strains of human immunodeficiency virus type 1 carrying an N88S mutation in protease have reduced infectivity, reduced replication capacity, and reduced fitness and process the Gag polyprotein precur

1 reference

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28 July 2018

MEGA2: molecular evolutionary genetics analysis software

1 reference

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28 July 2018

Analysis of total human immunodeficiency virus (HIV)-specific CD4(+) and CD8(+) T-cell responses: relationship to viral load in untreated HIV infection

1 reference

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28 July 2018

Role of CD8(+) lymphocytes in control of simian immunodeficiency virus infection and resistance to rechallenge after transient early antiretroviral treatment

1 reference

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28 July 2018

Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

1 reference

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28 July 2018

Genetic restriction of HIV-1 pathogenesis to AIDS by promoter alleles of IL10.

1 reference

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28 July 2018

Understanding the genetic diversity of HIV-1.

1 reference

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28 July 2018

A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression

1 reference

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28 July 2018

PCR-Based assay to quantify human immunodeficiency virus type 1 DNA in peripheral blood mononuclear cells

1 reference

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28 July 2018

Gender differences in HIV-1 diversity at time of infection

1 reference

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28 July 2018

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

1 reference

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28 July 2018

Emerging cytopathic and antigenic simian immunodeficiency virus variants influence AIDS progression.

1 reference

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28 July 2018

Highly sensitive methods for quantitation of human immunodeficiency virus type 1 RNA from plasma, cells, and tissues.

1 reference

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28 July 2018

Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya

1 reference

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28 July 2018

Host-specific modulation of the selective constraints driving human immunodeficiency virus type 1 env gene evolution

1 reference

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28 July 2018

Replicative fitness of protease inhibitor-resistant mutants of human immunodeficiency virus type 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

28 July 2018

Dramatic rise in plasma viremia after CD8(+) T cell depletion in simian immunodeficiency virus-infected macaques.

1 reference

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28 July 2018

HLA and HIV-1: heterozygote advantage and B*35-Cw*04 disadvantage

1 reference

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28 July 2018

Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline

1 reference

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28 July 2018

Potential contributions of viral envelope and host genetic factors in a human immunodeficiency virus type 1-infected long-term survivor

1 reference

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28 July 2018

Evolution of syncytium-inducing and non-syncytium-inducing biological virus clones in relation to replication kinetics during the course of human immunodeficiency virus type 1 infection.

1 reference

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28 July 2018

Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SF

1 reference

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28 July 2018

Recovery of replication-competent HIV despite prolonged suppression of plasma viremia

1 reference

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28 July 2018

The role of CCR5 and CCR2 polymorphisms in HIV-1 transmission and disease progression

1 reference

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28 July 2018

Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS

1 reference

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28 July 2018

Differential regulation of the antibody responses to Gag and Env proteins of human immunodeficiency virus type 1

1 reference

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28 July 2018

Change in coreceptor use correlates with disease progression in HIV-1--infected individuals

1 reference

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28 July 2018

Evolution of human immunodeficiency virus type 1 env sequence variation in patients with diverse rates of disease progression and T-cell function

1 reference

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28 July 2018

Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease

1 reference

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28 July 2018

Development of the anti-gp120 antibody response during seroconversion to human immunodeficiency virus type 1

1 reference

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28 July 2018

HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy

1 reference

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28 July 2018

Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period

1 reference

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28 July 2018

Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population

1 reference

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28 July 2018

Relationship of human immunodeficiency virus type 1 sequence heterogeneity to stage of disease

1 reference

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28 July 2018

Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol

1 reference

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29 October 2018

Higher CD4+ T cell counts associated with low viral pol replication capacity among treatment-naive adults in early HIV-1 infection

1 reference

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29 October 2018

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1 reference

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29 October 2018

Recombination following superinfection by HIV-1.

1 reference

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29 October 2018

Reversion of CTL escape–variant immunodeficiency viruses in vivo

1 reference

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29 October 2018

HIV evolution: CTL escape mutation and reversion after transmission

1 reference

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29 October 2018

Attenuated and nonproductive viral transcription in the lymphatic tissue of HIV-1-infected patients receiving potent antiretroviral therapy.

1 reference

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29 October 2018

Drug resistance mutations during structured treatment interruptions

1 reference

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29 October 2018

Emergence of minor populations of human immunodeficiency virus type 1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions

1 reference

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29 October 2018

Effects of CCR5-delta32 and CCR2-64I alleles on disease progression of perinatally HIV-1-infected children: an international meta-analysis

1 reference

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29 October 2018

A prospective trial of structured treatment interruptions in human immunodeficiency virus infection

1 reference

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29 October 2018

Increased In Vitro Cytopathicity of CC Chemokine Receptor 5–Restricted Human Immunodeficiency Virus Type 1 Primary Isolates Correlates with a Progressive Clinical Course of Infection

1 reference

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29 October 2018

From RNA to quasispecies: a DNA polymerase with proofreading activity is highly recommended for accurate assessment of viral diversity

1 reference

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29 October 2018

Rapid evolution of the neutralizing antibody response to HIV type 1 infection

1 reference

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29 October 2018

Persistence of drug-resistant HIV-1 after a structured treatment interruption and its impact on treatment response

1 reference

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29 October 2018

HIV RNA in plasma rebounds within days during structured treatment interruptions

1 reference

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29 October 2018

Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Residual HIV-specific CD4 and CD8 T cell frequencies after prolonged antiretroviral therapy reflect pretreatment plasma virus load

1 reference

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29 October 2018

Human immunodeficiency virus-specific CD8(+) T-cell responses do not predict viral growth and clearance rates during structured intermittent antiretroviral therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Individualising HIV treatment--pharmacogenetics and immunogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Effects of CCR5-Delta32, CCR2-64I, and SDF-1 3'A alleles on HIV-1 disease progression: An international meta-analysis of individual-patient data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Human leucocyte antigen supertypes and immune susceptibility to HIV-1, implications for vaccine design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Virological and immunological characteristics of HIV treatment failure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Control of viremia in simian immunodeficiency virus infection by CD8+ lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

In vitro replication kinetics of human immunodeficiency virus type 1 (HIV-1) variants in relation to virus load in long-term survivors of HIV-1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Cross-clade neutralization of primary isolates of human immunodeficiency virus type 1 by human monoclonal antibodies and tetrameric CD4-IgG.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Distinct replicative and cytopathic characteristics of human immunodeficiency virus isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Cellular Viral Rebound after Cessation of Potent Antiretroviral Therapy Predicted by Levels of Multiply Spliced HIV‐1 RNA Encodingnef

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Loss of Viral Control in Early HIV‐1 Infection Is Temporally Associated with Sequential Escape from CD8+T Cell Responses and Decrease in HIV–1–Specific CD4+and CD8+T Cell Frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Eventual AIDS vaccine failure in a rhesus monkey by viral escape from cytotoxic T lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Evolution and transmission of stable CTL escape mutations in HIV infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1168724

29 October 2018

Shifts in cell-associated HIV-1 RNA but not in episomal HIV-1 DNA correlate with new cycles of HIV-1 infection in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Decay of cell-associated HIV-1 DNA correlates with residual replication in patients treated during acute HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA and AIDS: a cautionary tale

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sensitive and viable identification of antigen-specific CD8+ T cells by a flow cytometric assay for degranulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proviral HIV-DNA predicts viral rebound and viral setpoint after structured treatment interruptions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of a stromal cell-derived factor-1 chemokine gene variant in the clinical course of HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of low HIV-1 RNA levels in plasma

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contrasting Genetic Influence of CCR2 and CCR5 Variants on HIV-1 Infection and Disease Progression

1 reference

https://pubmed.ncbi.nlm.nih.gov/15994796

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.79.14.9026-9037.2005

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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