(Q33889278)

29 July 2017

title

A measure of bending in nucleic acids structures applied to A-tract DNA. (English)

1 reference

29 July 2017

F Lankas

1

1 reference

29 July 2017

N Spacková

2

1 reference

29 July 2017

M Moakher

3

1 reference

29 July 2017

P Enkhbayar

4

1 reference

29 July 2017

J Sponer

5

1 reference

29 July 2017

language of work or name

English

0 references

publication date

31 January 2010

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29 July 2017

published in

Nucleic Acids Research

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29 July 2017

volume

38

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29 July 2017

issue

10

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29 July 2017

page(s)

3414-3422

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Creative Commons Attribution-NonCommercial 2.5 Generic

29 July 2017

copyright license

start time

10 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The unique structure of A-tracts and intrinsic DNA bending

28 July 2018

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Local and global effects of strong DNA bending induced during molecular dynamics simulations

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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A standard reference frame for the description of nucleic acid base-pair geometry.

28 July 2018

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Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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"...the tyranny of the lattice...".

28 July 2018

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28 July 2018

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28 July 2018

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A random-walk model for helix bending in B-DNA

28 July 2018

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DNA bending at adenine . thymine tracts

28 July 2018

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

28 July 2018

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Calibration of DNA curvature and a unified description of sequence-directed bending

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Temperature and salt dependence of the gel migration anomaly of curved DNA fragments

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Defining the structure of irregular nucleic acids: conventions and principles

28 July 2018

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Determination of the extent of DNA bending by an adenine-thymine tract

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Sequence-directed curvature of DNA.

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

On the parameterization of rigid base and basepair models of DNA from molecular dynamics simulations.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

The role of DNA shape in protein-DNA recognition

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Dynamics of B-DNA on the microsecond time scale.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Kinking occurs during molecular dynamics simulations of small DNA minicircles.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Evaluation of elastic properties of atomistic DNA models

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

High-resolution structure of an extended A-tract: [d(CGCAAATTTGCG)]2.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

DNA fine structure and dynamics in crystals and in solution: the impact of BI/BII backbone conformations

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Topological measurement of an A-tract bend angle: comparison of the bent and straightened states

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

The influence of the thymine C5 methyl group on spontaneous base pair breathing in DNA.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

Sequence-dependent elastic properties of DNA.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2879501

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29 October 2018

1 reference

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Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature

29 October 2018

1 reference

12 December 2020

The unusual conformation adopted by the adenine tracts in kinetoplast DNA

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DNA bend direction by phase sensitive detection

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Sequence-directed curvature of DNA

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ001

1 reference

29 July 2017

1 reference

29 July 2017

1 reference