(Q33893708)

29 July 2017

title

DNA recognition by the DNA primase of bacteriophage T7: a structure-function study of the zinc-binding domain (English)

1 reference

29 July 2017

1 reference

Charles C. Richardson

6

object named as

Charles C Richardson

1 reference

29 July 2017

Barak Akabayov

1

1 reference

29 July 2017

Seung-Joo Lee

2

1 reference

29 July 2017

Sabine R Akabayov

3

1 reference

29 July 2017

Sandeep Rekhi

4

1 reference

29 July 2017

Bin Zhu

5

1 reference

29 July 2017

language of work or name

English

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publication date

1 March 2009

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29 July 2017

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29 July 2017

volume

48

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29 July 2017

issue

8

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29 July 2017

page(s)

1763-1773

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Very fast prediction and rationalization of pKa values for protein-ligand complexes

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Zinc coordination environments in proteins as redox sensors and signal transducers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Benchmarking pK(a) prediction.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Primer initiation and extension by T7 DNA primase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

From alpha-helix to beta-sheet--a reversible metal ion induced peptide secondary structure switch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

A molecular handoff between bacteriophage T7 DNA primase and T7 DNA polymerase initiates DNA synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Zinc and sulfur: a critical biological partnership

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Modular architecture of the bacteriophage T7 primase couples RNA primer synthesis to DNA synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Principles governing Mg, Ca, and Zn binding and selectivity in proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Interaction of adjacent primase domains within the hexameric gene 4 helicase-primase of bacteriophage T7.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

IFEFFIT: interactive XAFS analysis and FEFF fitting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

The Cys4 zinc finger of bacteriophage T7 primase in sequence-specific single-stranded DNA recognition.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

An N-terminal fragment of the gene 4 helicase/primase of bacteriophage T7 retains primase activity in the absence of helicase activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

The role of the zinc motif in sequence recognition by DNA primases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Requirement for a zinc motif for template recognition by the bacteriophage T7 primase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

A 7-kDa region of the bacteriophage T7 gene 4 protein is required for primase but not for helicase activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Requirements for primer synthesis by bacteriophage T7 63-kDa gene 4 protein. Roles of template sequence and T7 56-kDa gene 4 protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Benchmarking pKa Prediction Methods for Residues in Proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Active site electronic structure and dynamics during metalloenzyme catalysis.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Cys(x)His(y)-Zn2+ interactions: thiol vs. thiolate coordination

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Factors governing the protonation state of cysteines in proteins: an Ab initio/CDM study.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Analysis of zinc-ligand bond lengths in metalloproteins: Trends and patterns

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880633

Effect of cyanide binding on the copper sites of cytochrome c oxidase: an X-ray absorption spectroscopic study

29 October 2018

1 reference

12 December 2020

Metal-coordination sphere in the methylated Ada protein-DNA co-complex

1 reference

12 December 2020

Factors governing the metal coordination number in metal complexes from Cambridge Structural Database analyses

1 reference

12 December 2020

Escherichia coli primase zinc is sensitive to substrate and cofactor binding

1 reference

12 December 2020

X-ray absorption studies of human matrix metalloproteinase-2 (MMP-2) bound to a highly selective mechanism-based inhibitor. comparison with the latent and active forms of the enzyme

1 reference

12 December 2020

Number of relevant independent points in x-ray-absorption fine-structure spectra

1 reference

12 December 2020

A statistical approach to the prediction of pK(a) values in proteins

1 reference

12 December 2020

The galvanization of biology: a growing appreciation for the roles of zinc

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI802123T

1 reference

29 July 2017

1 reference

29 July 2017

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