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Ranking gene-drug relationships in biomedical literature using Latent Dirichlet Allocation
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
title
Ranking gene-drug relationships in biomedical literature using Latent Dirichlet Allocation
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
main subject
Latent Dirichlet allocation
1 reference
based on heuristic
inferred from title
author name string
Yonghui Wu
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Mei Liu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
W Jim Zheng
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Zhongming Zhao
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Hua Xu
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
publication date
1 January 2012
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
published in
Pacific Symposium on Biocomputing
1 reference
stated in
Europe PubMed Central
PubMed publication ID
22174297
retrieved
29 July 2017
page(s)
422-433
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
cites work
Finding complex biological relationships in recent PubMed articles using Bio-LDA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Recent Progress in Automatically Extracting Information from the Pharmacogenomic Literature
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Using text to build semantic networks for pharmacogenomics
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
Improving the prediction of pharmacogenes using text-derived drug-gene relationships
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Pharmacogenomics: challenges and opportunities
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Implementing the iHOP concept for navigation of biomedical literature
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
CoPub Mapper: mining MEDLINE based on search term co-publication
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Extracting and characterizing gene-drug relationships from the literature
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
The KnowledgeMap project: development of a concept-based medical school curriculum database
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
28 July 2018
Mining MEDLINE: abstracts, sentences, or phrases?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
A literature network of human genes for high-throughput analysis of gene expression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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28 July 2018
Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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29 October 2018
When good drugs go bad.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
29 October 2018
RelEx--relation extraction using dependency parse trees
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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29 October 2018
The Unified Medical Language System (UMLS): integrating biomedical terminology
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
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29 October 2018
XplorMed: a tool for exploring MEDLINE abstracts
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4095990
retrieved
29 October 2018
Identifiers
PMC publication ID
4095990
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
PubMed publication ID
22174297
1 reference
stated in
Europe PubMed Central
PMC publication ID
4095990
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22174297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
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