(Q33901421)

29 July 2017

title

Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data (English)

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alternative mRNA splicing, via spliceosome

29 July 2017

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Roeland C H J van Ham

series ordinal

3

object named as

Roeland C H J van Ham

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29 July 2017

Edouard I Severing

1

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29 July 2017

Aalt D J van Dijk

series ordinal

2

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29 July 2017

publication date

16 May 2011

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29 July 2017

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29 July 2017

volume

11

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29 July 2017

issue

1

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29 July 2017

page(s)

82

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Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Stochastic noise in splicing machinery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Discovery and revision of Arabidopsis genes by proteogenomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

The unfoldomics decade: an update on intrinsically disordered proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

PRIDE: new developments and new datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

The implications of alternative splicing in the ENCODE protein complement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Improving gene annotation using peptide mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Protein degradation and protection against misfolded or damaged proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Mass spectrometry-based proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Why are "natively unfolded" proteins unstructured under physiologic conditions?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2229-11-82

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3118179

29 October 2018

Identifiers

DOI

10.1186/1471-2229-11-82

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

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