(Q33903683)

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ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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Jing Qin

1

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Junwen Wang

5

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author name string

Mulin Jun Li

2

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Europe PubMed Central

PubMed publication ID

29 July 2017

Panwen Wang

3

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Europe PubMed Central

PubMed publication ID

29 July 2017

Michael Q Zhang

4

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Europe PubMed Central

PubMed publication ID

29 July 2017

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publication date

17 May 2011

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Europe PubMed Central

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29 July 2017

Nucleic Acids Research

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Europe PubMed Central

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29 July 2017

39

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Europe PubMed Central

PubMed publication ID

29 July 2017

Web Server issue

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Europe PubMed Central

PubMed publication ID

29 July 2017

W430-6

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Europe PubMed Central

PubMed publication ID

29 July 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

14 November 2016

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April 2022 Public Data File from Crossref

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125757

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR332

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A mammalian promoter model links cis elements to genetic networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/21586587

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21586587

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKR332

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

DBLP publication ID

journals/nar/QinLWZW11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

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