(Q33905948)

29 July 2017

title

The mode and tempo of hepatitis C virus evolution within and among hosts (English)

1 reference

29 July 2017

1 reference

1 reference

3

Philippe Lemey

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Oliver G. Pybus

6

object named as

Oliver G Pybus

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Joe Parker

object named as

Joe Parker

2

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Aris Katzourakis

object named as

Aris Katzourakis

5

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author name string

Rebecca R Gray

1

1 reference

29 July 2017

Marco Salemi

4

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29 July 2017

publication date

19 May 2011

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29 July 2017

published in

BMC Evolutionary Biology

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29 July 2017

volume

11

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29 July 2017

page(s)

131

1 reference

Island biogeography reveals the deep history of SIV

29 July 2017

cites work

1 reference

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Resistance analysis of the hepatitis C virus NS5A inhibitor BMS-790052 in an in vitro replicon system

28 July 2018

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The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis

28 July 2018

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Evolutionary analysis of the dynamics of viral infectious disease

28 July 2018

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Genetic history of hepatitis C virus in East Asia

28 July 2018

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BEAST: Bayesian evolutionary analysis by sampling trees

28 July 2018

1 reference

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Replication of hepatitis C virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

PAML 4: phylogenetic analysis by maximum likelihood

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

HIV evolutionary dynamics within and among hosts

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Viral hepatitis and liver cancer: the case of hepatitis C.

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Relaxed phylogenetics and dating with confidence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

An Interplay between Hypervariable Region 1 of the Hepatitis C Virus E2 Glycoprotein, the Scavenger Receptor BI, and High-Density Lipoprotein Promotes both Enhancement of Infection and Protection against Neutralizing Antibodies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Divergent and convergent evolution after a common-source outbreak of hepatitis C virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Cellular immune selection with hepatitis C virus persistence in humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Immune evasion versus recovery after acute hepatitis C virus infection from a shared source

28 July 2018

1 reference

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Unifying the epidemiological and evolutionary dynamics of pathogens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Evolution of hepatitis C virus in blood donors and their respective recipients

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades

28 July 2018

1 reference

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Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

28 July 2018

1 reference

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Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

The epidemic behavior of the hepatitis C virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Bayesian selection of continuous-time Markov chain evolutionary models

28 July 2018

1 reference

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Prospective characterization of full-length hepatitis C virus NS5A quasispecies during induction and combination antiviral therapy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: studies of infected donor-recipient clusters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

The NS5A protein of hepatitis C virus partially inhibits the antiviral activity of interferon

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as a decoy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Human immunodeficiency virus-infected individuals contain provirus in small numbers of peripheral mononuclear cells and at low copy numbers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Nucleotide sequence and mutation rate of the H strain of hepatitis C virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Genomic characterization and mutation rate of hepatitis C virus isolated from a patient who contracted hepatitis during an epidemic of non-A, non-B hepatitis in Japan

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

Genetic drift of hepatitis C virus during an 8.2-year infection in a chimpanzee: variability and stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

HVR-1 quasispecies modifications occur early and are correlated to initial but not sustained response in HCV-infected patients treated with pegylated- or standard-interferon and ribavirin

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Hepatitis C virus quasi-species dynamics predict progression of fibrosis after liver transplantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Comparison of the rate of sequence variation in the hypervariable region of E2/NS1 region of hepatitis C virus in normal and hypogammaglobulinemic patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Measurably evolving populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Viral load change and sequential evolution of entire hepatitis C virus genome in Irish recipients of single source-contaminated anti-D immunoglobulin*.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Hepatitis C virus F protein sequence reveals a lack of functional constraints and a variable pattern of amino acid substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Reduction of synonymous substitutions in the core protein gene of hepatitis C virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

CD8 Epitope Escape and Reversion in Acute HCV Infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Hepatitis C virus (HCV) NS5A protein: role in HCV replication and resistance to interferon-alpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Comparison of full-length sequences of interferon-sensitive and resistant hepatitis C virus 1b. Sensitivity to interferon is conferred by amino acid substitutions in the NS5A region

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Hepatitis C virus and the controversial role of the interferon sensitivity determining region in the response to interferon treatment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Sequence variation in hepatitis C virus nonstructural protein 5A predicts clinical outcome of pegylated interferon/ribavirin combination therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-131

Polymorphisms of hepatitis C virus non-structural protein 5A and core protein and clinical outcome of pegylated-interferon/ribavirin combination therapy

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112090

29 October 2018

Identifiers

DOI

10.1186/1471-2148-11-131

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uvp7psi3anauxbz5az5e266twm

30 July 2022

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-131

release_uvp7psi3anauxbz5az5e266twm

9 September 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uvp7psi3anauxbz5az5e266twm

30 July 2022

https://api.fatcat.wiki/v0/release/uvp7psi3anauxbz5az5e266twm

0 references

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/uvp7psi3anauxbz5az5e266twm

1 reference

30 July 2022