(Q33907134)

29 July 2017

title

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein (English)

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29 July 2017

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Pastor N

1

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29 July 2017

Pardo L

series ordinal

2

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29 July 2017

Weinstein H

series ordinal

3

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29 July 2017

language of work or name

English

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publication date

1 August 1997

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29 July 2017

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29 July 2017

volume

73

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29 July 2017

issue

2

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29 July 2017

page(s)

640-652

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A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA

29 July 2017

cites work

1 reference

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TBP binds the transcriptionally inactive TA5 sequence but the resulting complex is not efficiently recognised by TFIIB and TFIIA.

5 July 2018

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Analysis of co-crystal structures to identify the stereochemical determinants of the orientation of TBP on the TATA box.

5 July 2018

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How proteins recognize the TATA box

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Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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CA runs increase DNA flexibility in the complex of lambda Cro protein with the OR3 site

5 July 2018

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5 July 2018

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Crystal structure of a yeast TBP/TATA-box complex

5 July 2018

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5 July 2018

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Common features in DNA recognition helices of eukaryotic transcription factors.

5 July 2018

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TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs

5 July 2018

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Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities

5 July 2018

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A permutational approach toward protein-DNA recognition

5 July 2018

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Detection of localized DNA flexibility

5 July 2018

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A framework for the DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules

5 July 2018

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New concepts in protein-DNA recognition: sequence-directed DNA bending and flexibility.

5 July 2018

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Bending and curvature calculations in B-DNA.

5 July 2018

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Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics

5 July 2018

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The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation

5 July 2018

1 reference

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Crystal structure of a TFIIB-TBP-TATA-element ternary complex

5 July 2018

1 reference

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Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes

5 July 2018

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1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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On the specificity of DNA-protein interactions

5 July 2018

1 reference

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Crystal structure of trp repressor/operator complex at atomic resolution

5 July 2018

1 reference

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Protein-DNA interaction. No code for recognition

5 July 2018

1 reference

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The intrinsic curvature of DNA in solution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Saturation mutagenesis of a yeast his3 "TATA element": genetic evidence for a specific TATA-binding protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Origin of DNA helical structure and its sequence dependence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Recognition of a DNA operator by the repressor of phage 434: a view at high resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Defining the structure of irregular nucleic acids: conventions and principles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Sequence dependence of DNA conformational flexibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Sequence-directed curvature of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Analysis of local helix geometry in three B-DNA decamers and eight dodecamers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Two distinct domains in the yeast transcription factor IID and evidence for a TATA box-induced conformational change

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Static and statistical bending of DNA evaluated by Monte Carlo simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Straightening out the bends in curved DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Biochemical and genetic characterization of a yeast TFIID mutant that alters transcription in vivo and DNA binding in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Global features of DNA structure by comparative gel electrophoresis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Conformational sub-states in B-DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Toward rules relating zinc finger protein sequences and DNA binding site preferences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

DNA flexibility as a function of allomorphic conformation and of base sequence.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Static and Dynamic Conformational Properties of AT sequences in B-DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Sequence-specific recognition of double helical nucleic acids by proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

The Protein Data Bank: a computer-based archival file for macromolecular structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Anisotropic flexibility of DNA and the nucleosomal structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Role of base-backbone and base-base interactions in alternating DNA conformations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Flexing and folding double helical DNA

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180963

Modulation of DNA-binding specificity within the nuclear receptor family by substitutions at a single amino acid position

29 October 2018

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12 December 2020

Dimerization of the TATA binding protein

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12 December 2020

Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA

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12 December 2020

DNA bending is an important component of site-specific recognition by the TATA binding protein

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12 December 2020

Thermodynamic and Kinetic Characterization of the Binding of the TATA Binding Protein to the Adenovirus E4 Promoter

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12 December 2020

How the structure of an adenine tract depends on sequence context: a new model for the structure of TnAn DNA sequences

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12 December 2020

Sequence-dependent DNA structure. The role of base stacking interactions

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12 December 2020

Protein-DNA recognition: new perspectives and underlying themes

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12 December 2020

Sequence Elements Responsible for DNA Curvature

1 reference

12 December 2020

B-DNA twisting correlates with base-pair morphology.

1 reference

12 December 2020

Electrostatic analysis of DNA binding properties in lysine to leucine mutants of TATA-box binding proteins

1 reference

12 December 2020

Structural-perturbation approaches to thermodynamics of site-specific protein-DNA interactions

1 reference

12 December 2020

A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein

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12 December 2020

Crystal structure of the yeast TFIIA/TBP/DNA complex

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12 December 2020

Mechanics of sequence-dependent stacking of bases in B-DNA

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12 December 2020

Base sequence effects in double helical DNA. I. Potential energy estimates of local base morphology

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12 December 2020

10.1016/S0006-3495(97)78099-8

Identifiers

DOI

1 reference

29 July 2017

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29 July 2017

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