(Q33908094)

29 July 2017

title

A bayesian mixture model for comparative spectral count data in shotgun proteomics (English)

1 reference

29 July 2017

1 reference

James G Booth

1

1 reference

29 July 2017

Kirsten E Eilertson

series ordinal

2

1 reference

29 July 2017

Paul Dominic B Olinares

series ordinal

3

1 reference

29 July 2017

Haiyuan Yu

series ordinal

4

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29 July 2017

publication date

20 May 2011

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Molecular & Cellular Proteomics

29 July 2017

published in

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29 July 2017

volume

10

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29 July 2017

issue

8

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29 July 2017

page(s)

M110.007203

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Increased power for the analysis of label-free LC-MS/MS proteomics data by combining spectral counts and peptide peak attributes

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Options and considerations when selecting a quantitative proteomics strategy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

PepC: proteomics software for identifying differentially expressed proteins based on spectral counting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Significance analysis of spectral count data in label-free shotgun proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

PatternLab for proteomics: a tool for differential shotgun proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

ProteoWizard: open source software for rapid proteomics tools development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Mass spectrometry and protein analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Relative, label-free protein quantitation: Spectral counting error statistics from nine replicate MudPIT samples

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

The BUGS project: Evolution, critique and future directions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Effect of dynamic exclusion duration on spectral count based quantitative proteomics.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

A fast SEQUEST cross correlation algorithm

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Quantitative mass spectrometry in proteomics: a critical review

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3149093

29 October 2018

Identifiers

DOI

10.1074/MCP.M110.007203

1 reference

release_lqbo64v67fhv3irqjlugww3xgq

29 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/lqbo64v67fhv3irqjlugww3xgq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3149093

1 reference

29 July 2017

1 reference