(Q33919719)

30 July 2017

title

Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images (English)

1 reference

30 July 2017

1 reference

José-Rodrigo Rodríguez

3

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Ángel Rodríguez

object named as

Angel Rodríguez

5

0 references

Lidia Alonso-Nanclares

object named as

Lidia Alonso-Nanclares

2

0 references

Javier DeFelipe

object named as

Javier Defelipe

4

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author name string

Juan Morales

1

1 reference

30 July 2017

Angel Merchán-Pérez

6

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30 July 2017

publication date

18 March 2011

1 reference

Frontiers in Neuroanatomy

30 July 2017

published in

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30 July 2017

volume

5

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30 July 2017

page(s)

18

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Ssecrett and NeuroTrace: interactive visualization and analysis tools for large-scale neuroscience data sets

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Counting Synapses Using FIB/SEM Microscopy: A True Revolution for Ultrastructural Volume Reconstruction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

A computational framework for ultrastructural mapping of neural circuitry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Proximity of excitatory and inhibitory axon terminals adjacent to pyramidal cell bodies provides a putative basis for nonsynaptic interactions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

5 July 2018

ImageJ for microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Serial sectioning and electron microscopy of large tissue volumes for 3D analysis and reconstruction: a case study of the calyx of Held

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Axo-somatic and axo-dendritic synapses of the cerebral cortex: an electron microscope study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Microstructure of the neocortex: comparative aspects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Estimation of the number of synapses in the cerebral cortex: methodological considerations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

The morphology of synapses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Computer visualization of three-dimensional image data using IMOD

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Synaptic patterns on different cell types in the different laminae of the cat visual cortex. An electron microscope study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

An empirical assessment of stereological formulae applied to the counting of synaptic disks in the cerebral cortex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Uniform serial sectioning for transmission electron microscopy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Reconstruct: a free editor for serial section microscopy

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

A visualization and segmentation toolbox for electron microscopy

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3099746

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21633491

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The unbiased estimation of number and sizes of arbitrary particles using the disector

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21633491

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FNANA.2011.00018

1 reference

30 July 2017

1 reference

30 July 2017

1 reference