(Q33924538)

30 July 2017

title

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome (English)

1 reference

30 July 2017

8

Hélène Bergès

0 references

Christophe Plomion

11

Christophe Plomion

0 references

Grégoire Le Provost

7

Grégoire Le Provost

0 references

Catherine Bodénès

6

Catherine Bodénès

0 references

Antoine Kremer

10

Antoine Kremer

1 reference

30 July 2017

author name string

Patricia Faivre Rampant

1

1 reference

30 July 2017

Isabelle Lesur

2

1 reference

30 July 2017

Clément Boussardon

3

1 reference

30 July 2017

Frédérique Bitton

4

1 reference

30 July 2017

Marie-Laure Martin-Magniette

5

1 reference

30 July 2017

Sylvia Fluch

9

1 reference

30 July 2017

language of work or name

English

0 references

publication date

6 June 2011

1 reference

30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

292

1 reference

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

30 July 2017

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1 reference

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A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

28 July 2018

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Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

28 July 2018

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The genome of the domesticated apple (Malus × domestica Borkh.)

28 July 2018

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Population differentiation of sessile oak at the altitudinal front of migration in the French Pyrenees

28 July 2018

1 reference

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Assembly of large genomes using second-generation sequencing

28 July 2018

1 reference

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The value of position-specific priors in motif discovery using MEME.

28 July 2018

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SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

28 July 2018

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The Pfam protein families database

28 July 2018

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Using RepeatMasker to identify repetitive elements in genomic sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

InterPro: the integrative protein signature database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

28 July 2018

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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Construction and characterization of BAC libraries from major grapevine cultivars

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

mreps: Efficient and flexible detection of tandem repeats in DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative est

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Novel perspectives in wood certification and forensics: dry wood as a source of DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

Evolution of the Fagaceae: The Implications of Foliar Features

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

Molecular characterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant protein and expression analysis in Lupinus plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

A greedy algorithm for aligning DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

Swiss-Prot: juggling between evolution and stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

A Survey of the Brassica rapa genome by BAC-end sequence analysis and comparison with Arabidopsis thaliana.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132169

BAC-end sequence-based SNPs and Bin mapping for rapid integration of physical and genetic maps in apple

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-292

Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs)

21 January 2018

1 reference

12 December 2020

Protein structure. Chaperones, paperones

1 reference

12 December 2020

Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns

1 reference

12 December 2020

Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-12-292

1 reference

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-292

9 September 2019

1 reference

30 July 2017

1 reference