(Q33924598)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Geoff Webb

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Jiangning Song

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Yuan Li

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Mingjun Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Huilin Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Hao Tan

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

21 July 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

5765

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites

10 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Position-specific analysis and prediction for protein lysine acetylation based on multiple features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

FunSAV: predicting the functional effect of single amino acid variants using a two-stage random forest model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Mechanistic insights into the regulation of metabolic enzymes by acetylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

ASEB: a web server for KAT-specific acetylation site prediction.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

TANGLE: two-level support vector regression approach for protein backbone torsion angle prediction from primary sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Reorganizing the protein space at the Universal Protein Resource (UniProt)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

InterPro in 2011: new developments in the family and domain prediction database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Predicting residue-residue contacts and helix-helix interactions in transmembrane proteins using an integrative feature-based random forest approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Protein acetylation in prokaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

The tale of protein lysine acetylation in the cytoplasm.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Identifying human kinase-specific protein phosphorylation sites by integrating heterogeneous information from various sources

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

PHOSIDA 2011: the posttranslational modification database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

CPLA 1.0: an integrated database of protein lysine acetylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Predicting post-translational lysine acetylation using support vector machines.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Decoding signalling networks by mass spectrometry-based proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Regulation of cellular metabolism by protein lysine acetylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Proteome-wide prediction of acetylation substrates

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Lysine acetylation targets protein complexes and co-regulates major cellular functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

The unfoldomics decade: an update on intrinsically disordered proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

AAindex: amino acid index database, progress report 2008

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

A review of feature selection techniques in bioinformatics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Substrate and functional diversity of lysine acetylation revealed by a proteomics survey

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Peptide sequence analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Linear regression models for solvent accessibility prediction in proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Site-specific analysis of histone methylation and acetylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

The DISOPRED server for the prediction of protein disorder

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

The importance of intrinsic disorder for protein phosphorylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

KEGG: kyoto encyclopedia of genes and genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104576

Histone acetylation in insect chromosomes.

28 July 2018

1 reference

The presence of acetyl groups of histones

21 January 2018

1 reference

Proteome-wide analysis of amino acid variations that influence protein lysine acetylation.

21 January 2018

1 reference

Lysine acetylation sites prediction using an ensemble of support vector machine classifiers

21 January 2018

1 reference

N-Ace: using solvent accessibility and physicochemical properties to identify protein N-acetylation sites.

21 January 2018

1 reference

Improved prediction of lysine acetylation by support vector machines

21 January 2018

1 reference

Predicting N-terminal acetylation based on feature selection method

21 January 2018

1 reference

Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation.

21 January 2018

1 reference

Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets

21 January 2018

1 reference

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

21 January 2018

1 reference

The protein trinity--linking function and disorder.

21 January 2018

1 reference

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

A holistic in silico approach to predict functional sites in protein structures

21 January 2018

1 reference

Prediction of protein-RNA binding sites by a random forest method with combined features

21 January 2018

1 reference

Improved visualization of protein consensus sequences by iceLogo

21 January 2018

1 reference

Amino-terminal alanine functions in a calcium-specific process essential for membrane binding by prothrombin fragment 1

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25042424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Random Forests

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

DOI

10.1038/SREP05765

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

10 March 2020

ADS bibcode

2014NatSR...4.5765L

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

25042424

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25042424%20AND%20SRC:MED&resulttype=core&format=json