(Q33925823)

30 July 2017

title

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes (English)

1 reference

30 July 2017

0 references

Wenwei Xiong

1

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author name string

Limei He

2

1 reference

30 July 2017

Jinsheng Lai

3

1 reference

30 July 2017

Hugo K Dooner

4

1 reference

30 July 2017

Chunguang Du

5

1 reference

30 July 2017

language of work or name

English

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publication date

30 June 2014

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

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30 July 2017

volume

111

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30 July 2017

issue

28

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30 July 2017

page(s)

10263-10268

1 reference

Identification and evolution of the silkworm helitrons and their contribution to transcripts

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

PlantLoc: an accurate web server for predicting plant protein subcellular localization by substantiality motif.

5 July 2018

1 reference

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CD-HIT: accelerated for clustering the next-generation sequencing data

5 July 2018

1 reference

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Retrieving backbone string neighbors provides insights into structural modeling of membrane proteins.

5 July 2018

1 reference

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Phytozome: a comparative platform for green plant genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

The evolution and diversity of DNA transposons in the genome of the Lizard Anolis carolinensis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

The B73 Maize Genome: Complexity, Diversity, and Dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

The polychromatic Helitron landscape of the maize genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

A cornucopia of Helitrons shapes the maize genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Local combinational variables: an approach used in DNA-binding helix-turn-helix motif prediction with sequence information.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Structure-based discovery and description of plant and animal Helitrons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

A comparative computational analysis of nonautonomous helitron elements between maize and rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Computational prediction and molecular confirmation of Helitron transposons in the maize genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

A unified classification system for eukaryotic transposable elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Functional representation of enzymes by specific peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Maize haplotype with a helitron-amplified cytidine deaminase gene copy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Unsupervised learning of natural languages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Gene movement by Helitron transposons contributes to the haplotype variability of maize

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Intraspecific violation of genetic colinearity and its implications in maize

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Rolling-circle transposons in eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

Highly specific protein sequence motifs for genome analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4104883

The maize genome contains a helitron insertion

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1410068111

Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1410068111

Model-based identification of Helitrons results in a new classification of their families in Arabidopsis thaliana

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24982153

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1410068111

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference