(Q33927257)

30 July 2017

Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks (English)

1 reference

30 July 2017

5

Mark Gerstein

1 reference

30 July 2017

Koon-Kiu Yan

1

1 reference

30 July 2017

Gang Fang

series ordinal

2

1 reference

30 July 2017

Nitin Bhardwaj

series ordinal

3

1 reference

30 July 2017

Roger P Alexander

series ordinal

4

1 reference

30 July 2017

3 May 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

107

1 reference

30 July 2017

9186-9191

1 reference

30 July 2017

20

1 reference

Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Bacteria as computers making computers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Principles of transcriptional regulation and evolution of the metabolic system in E. coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

PAML 4: phylogenetic analysis by maximum likelihood

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Genomic analysis of the hierarchical structure of regulatory networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Genomic analysis of regulatory network dynamics reveals large topological changes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Structure and evolution of transcriptional regulatory networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Modeling transcriptional regulatory networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Transcriptional regulatory networks in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Network motifs in the transcriptional regulation network of Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Emergence of Scaling in Random Networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Network biology: understanding the cell's functional organization

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Software systems as complex networks: structure, function, and evolvability of software collaboration graphs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Biological networks: the tinkerer as an engineer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

On the criteria to be used in decomposing systems into modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Persistence drives gene clustering in bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Evolutionary rate in the protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Programs, life cycles, and laws of software evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0914771107

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889091

Computational architecture of the yeast regulatory network

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20439753

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0914771107

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference