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Amino acid substitution matrices
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
review article
1 reference
stated in
Europe PubMed Central
title
Amino acid substitution matrices
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
author name string
Henikoff S
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
Henikoff JG
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
publication date
1 January 2000
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
published in
Advances in Protein Chemistry
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
volume
54
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
page(s)
73-97
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
cites work
Do aligned sequences share the same fold?
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Amino acid substitution matrices from an information theoretic perspective
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7 January 2021
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Local alignment statistics
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Crossref
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7 January 2021
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7 January 2021
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7 January 2021
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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Amino acid substitution during functionally constrained divergent evolution of protein sequences.
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7 January 2021
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GenBank
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Crossref
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Some useful statistical properties of position-weight matrices
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7 January 2021
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Maximum discrimination hidden Markov models of sequence consensus
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7 January 2021
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Mutation data matrix and its uses
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7 January 2021
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Amino acid difference formula to help explain protein evolution
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Homology detection via family pairwise search
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Unified approach to alignment and phylogenies
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7 January 2021
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Performance evaluation of amino acid substitution matrices
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7 January 2021
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Position-based sequence weights
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7 January 2021
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A Structural Basis for Sequence Comparisons
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A mutation data matrix for transmembrane proteins
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BRCA1 protein products ... Functional motifs...
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7 January 2021
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Context-dependent optimal substitution matrices
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7 January 2021
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Hidden Markov models in computational biology. Applications to protein modeling
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7 January 2021
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Rapid and sensitive protein similarity searches
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7 January 2021
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inferred from DOI database lookup
Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities
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7 January 2021
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A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%.
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7 January 2021
based on heuristic
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Two types of amino acid substitutions in protein evolution
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7 January 2021
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A new substitution matrix for protein sequence searches based on contact frequencies in protein structures
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7 January 2021
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Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores.
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7 January 2021
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Approximate statistics of gapped alignments
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7 January 2021
based on heuristic
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A general method applicable to the search for similarities in the amino acid sequence of two proteins
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7 January 2021
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7 January 2021
based on heuristic
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Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds
1 reference
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Crossref
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7 January 2021
based on heuristic
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Rapid and sensitive sequence comparison with FASTP and FASTA
1 reference
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Crossref
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7 January 2021
based on heuristic
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Comparison of methods for searching protein sequence databases.
1 reference
stated in
Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Effective protein sequence comparison
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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Predictive motifs derived from cytosine methyltransferases
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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New scoring matrix for amino acid residue exchanges based on residue characteristic physical parameters
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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Weighting aligned protein or nucleic acid sequences to correct for unequal representation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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Identification of common molecular subsequences
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
based on heuristic
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Sequence alignment and penalty choice. Review of concepts, case studies and implications
1 reference
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7 January 2021
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An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited
1 reference
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7 January 2021
based on heuristic
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A protein class database organized with ProSite protein groups and PIR superfamilies.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
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Bayesian adaptive sequence alignment algorithms.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954003-0
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7 January 2021
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Identifiers
DOI
10.1016/S0065-3233(00)54003-0
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
Fatcat ID
release_k5y3pmip7fetznrd4otivkqcge
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Fatcat
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24 November 2022
based on heuristic
mapped directly with Wikidata item
PubMed ID
10829225
1 reference
stated in
Europe PubMed Central
PubMed ID
10829225
retrieved
30 July 2017
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