(Q33928769)

30 July 2017

1 reference

title

Modeling RNA tertiary structure from patterns of sequence variation (English)

1 reference

30 July 2017

Michel F

1

1 reference

30 July 2017

Costa M

series ordinal

2

1 reference

30 July 2017

Massire C

series ordinal

3

1 reference

30 July 2017

Westhof E

series ordinal

4

1 reference

30 July 2017

language of work or name

English

0 references

publication date

1 January 2000

1 reference

30 July 2017

published in

Methods in Enzymology

1 reference

30 July 2017

volume

317

1 reference

30 July 2017

page(s)

491-510

1 reference

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

30 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Secondary structure model for 23S ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Making ends meet: a model for RNA splicing in fungal mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. I. Fitting the RNA to a 3D electron microscopic map at 20 A.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. II. The RNA-protein interaction data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. III. The topography of the functional centre.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

In vitro selection of RNA molecules that bind specific ligands

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

The secondary structure and sequence optimization of an RNA ligase ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Evolutionary optimization of the catalytic properties of a DNA-cleaving ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Continuous in vitro evolution of catalytic function

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Identification of base-triples in RNA using comparative sequence analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Conserved geometrical base-pairing patterns in RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A comparative database of group I intron structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Identifying potential tRNA genes in genomic DNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Automatic identification of group I intron cores in genomic DNA sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

RNA sequence analysis using covariance models

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Stochastic context-free grammars for tRNA modeling

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A dynamic programming algorithm for RNA structure prediction including pseudoknots

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

An RNA folding method capable of identifying pseudoknots and base triples.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Selective optimization of the Rev-binding element of HIV-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A major family of motifs involving G.A mismatches in ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Inferring the conformation of RNA base pairs and triples from patterns of sequence variation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Detailed molecular model for transfer ribonucleic acid

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Structlre of transfer RNA molecules containing the long variable loop

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Mutational analysis of conserved nucleotides in a self-splicing group I intron

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Frequent use of the same tertiary motif by self-folding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

The conformation of loop E of eukaryotic 5S ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

The sarcin/ricin loop, a modular RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Multiple tertiary interactions involving domain II of group II self-splicing introns.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

An RNA conformational change between the two chemical steps of group II self-splicing.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Compilation of tRNA sequences and sequences of tRNA genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

1 reference

7 January 2021

Monitoring of the cooperative unfolding of the sunY group I intron of bacteriophage T4. The active form of the sunY ribozyme is stabilized by multiple interactions with 3' terminal intron components

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

A three-dimensional model of the Rev-binding element of HIV-1 derived from analyses of aptamers

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Crystallographic refinement of yeast aspartic acid transfer RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Dynamic RNA-RNA interactions in the spliceosome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Visualizing the higher order folding of a catalytic RNA molecule

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

Randomization of genes by PCR mutagenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2800%2917031-4

7 January 2021

10.1016/S0076-6879(00)17031-4

Identifiers

DOI

1 reference

30 July 2017

1 reference