(Q33933944)

30 July 2017

title

A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments (English)

1 reference

30 July 2017

1 reference

Chenghang Zong

2

0 references

Peter Guy Wolynes

series ordinal

3

object named as

Peter G Wolynes

1 reference

30 July 2017

Patrick Weinkam

1

1 reference

30 July 2017

language of work or name

English

0 references

publication date

22 August 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

30 July 2017

volume

102

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30 July 2017

issue

35

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30 July 2017

page(s)

12401-12406

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Protein folding: the stepwise assembly of foldon units

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Three-body interactions improve the prediction of rate and mechanism in protein folding models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Unifying features in protein-folding mechanisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Role of cofactors in protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Analysis of multiple folding routes of proteins by a coarse-grained dynamics model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Prediction of folding mechanism for circular-permuted proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

An amino acid code for protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Associative memory hamiltonians for structure prediction without homology: alpha-helical proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Two-state expansion and collapse of a polypeptide

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

A simple model for calculating the kinetics of protein folding from three-dimensional structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Folding funnels and energy landscapes of larger proteins within the capillarity approximation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

On the origin of the cooperativity of protein folding: implications from model simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Foldons, protein structural modules, and exons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Funnels, pathways, and the energy landscape of protein folding: a synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Protein folding intermediates: native-state hydrogen exchange

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Protein structures and split genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Stable submolecular folding units in a non-compact form of cytochrome c

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

How cytochrome c folds, and why: submolecular foldon units and their stepwise sequential stabilization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Toward protein tertiary structure recognition by means of associative memory hamiltonians

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Unified theory of collapse, folding, and glass transitions in associative-memory Hamiltonian models of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Explicit-chain model of native-state hydrogen exchange: implications for event ordering and cooperativity in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Kinetics of cytochrome C folding: atomically detailed simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Scanning malleable transition state ensembles: comparing theory and experiment for folding protein U1A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Structural features of the cytochrome C molten globule revealed by fluorescence energy transfer kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Modulation of the folding energy landscape of cytochrome C with salt

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Rapid comparison of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505274102

Protein folding mechanisms and the multidimensional folding funnel.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194935

Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16116080

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exploring structures in protein folding funnels with free energy functionals: the denatured ensemble

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16116080

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0505274102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference