(Q33940748)

30 July 2017

title

Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria (English)

1 reference

30 July 2017

1 reference

1

Frederic Bertels

1 reference

30 July 2017

2

Paul B Rainey

1 reference

30 July 2017

publication date

16 June 2011

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30 July 2017

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30 July 2017

volume

7

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30 July 2017

issue

6

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30 July 2017

page(s)

e1002132

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

16 June 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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28 July 2018

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28 July 2018

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28 July 2018

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Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

28 July 2018

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Very small mobile repeated elements in cyanobacterial genomes.

28 July 2018

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Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501.

28 July 2018

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The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse

28 July 2018

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Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection

28 July 2018

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Small mobile sequences in bacteria display diverse structure/function motifs.

28 July 2018

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

28 July 2018

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KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase

28 July 2018

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Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

28 July 2018

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Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

28 July 2018

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Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

28 July 2018

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Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

28 July 2018

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The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

28 July 2018

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Multiple sequence alignment with the Clustal series of programs

28 July 2018

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28 July 2018

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Mobilization of a transposon in the rice genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Species-specific repetitive extragenic palindromic (REP) sequences in Pseudomonas putida.

28 July 2018

1 reference

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Transcription attenuation associated with bacterial repetitive extragenic BIME elements.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Artemis: sequence visualization and annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Short palindromic repetitive DNA elements in enterobacteria: a survey

28 July 2018

1 reference

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IS1397 is active for transposition into the chromosome of Escherichia coli K-12 and inserts specifically into palindromic units of bacterial interspersed mosaic elements.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

LTR-retrotransposons and MITEs: important players in the evolution of plant genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Chi and the RecBC D enzyme of Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

A novel intercistronic regulatory element of prokaryotic operons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Repetitive extragenic palindromic sequences: a major component of the bacterial genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

The neighbor-joining method: a new method for reconstructing phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Slipped-strand mispairing: a major mechanism for DNA sequence evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Repetitive extragenic palindromic sequences, mRNA stability and gene expression: evolution by gene conversion? A review

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Palindromic units are part of a new bacterial interspersed mosaic element (BIME).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

ERIC sequences: a novel family of repetitive elements in the genomes ofEscherichia coli, Salmonella typhimuriumand other enterobacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Short, interspersed repetitive DNA sequences in prokaryotic genomes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Analysis of relationships among isolates of Citrobacter diversus by using DNA fingerprints generated by repetitive sequence-based primers in the polymerase chain reaction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

Selection for chromosome architecture in bacteria.

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Enterobacterial repetitive intergenic consensus (ERIC) sequences in Escherichia coli: Evolution and implications for ERIC-PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Reconsidering the significance of genomic word frequencies

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

A giant family of short palindromic sequences in Stenotrophomonas maltophilia.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3116915

The evolutionary dynamics of repetitive DNA in eukaryotes

29 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002132

Repetitive extragenic palindromic sequences in the Pseudomonas syringae pv. tomato DC3000 genome: extragenic signals for genome reannotation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21698139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1002132

1 reference

30 July 2017

1 reference

30 July 2017

1 reference