(Q33942985)

30 July 2017

DNA repair of a single UV photoproduct in a designed nucleosome (English)

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30 July 2017

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J V Kosmoski

1

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30 July 2017

E J Ackerman

series ordinal

2

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30 July 2017

M J Smerdon

series ordinal

3

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30 July 2017

language of work or name

English

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publication date

21 August 2001

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

98

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30 July 2017

10113-10118

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30 July 2017

18

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describes a project that uses

30 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC56924/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

DNA damage in the nucleosome core is refractory to repair by human excision nuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Acetylation and chromosomal functions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Accessing DNA damage in chromatin: insights from transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Nucleotide excision repair in nuclear extracts from Xenopus oocytes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Synthesis and nucleosome structure of DNA containing a UV photoproduct at a specific site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Solution structure of a DNA decamer duplex containing the stable 3' T.G base pair of the pyrimidine(6-4)pyrimidone photoproduct [(6-4) adduct]: implications for the highly specific 3' T --> C transition of the (6-4) adduct

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Chromatin-modifying and -remodeling complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Chromatin rearrangements during nucleotide excision repair

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Tight correlation between inhibition of DNA repair in vitro and transcription factor IIIA binding in a 5S ribosomal RNA gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Modulation of DNA damage and DNA repair in chromatin.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Diversity of prokaryotic chromosomal proteins and the origin of the nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Nucleosome unfolding during DNA repair in normal and xeroderma pigmentosum (group C) human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

The histone tails of the nucleosome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

DNA binding within the nucleosome core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Crystal structure of the nucleosome core particle at 2.8 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

The binding of a Fos/Jun heterodimer can completely disrupt the structure of a nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

DNA damage can alter the stability of nucleosomes: effects are dependent on damage type

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Remodeling the chromatin structure of a nucleosome array by transcription factor-targeted trans-displacement of histones.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

5 July 2018

DNA repair in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

DNA polymerases alpha and beta are required for DNA repair in an efficient nuclear extract from Xenopus oocytes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Structure-function studies of the T4 endonuclease V repair enzyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Nonrandom induction of pyrimidine-pyrimidone (6-4) photoproducts in ultraviolet-irradiated human chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

The structure of DNA in a nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Photochemistry of nucleic acids in cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Nucleosome rearrangement in human chromatin during UV-induced DNA- reapir synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56924

Nucleotide excision repair of the 5 S ribosomal RNA gene assembled into a nucleosome.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Development and validation of the spiral Salmonella assay: an automated approach to bacterial mutagenicity testing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Photofootprint of nucleosome core DNA in intact chromatin having different structural states

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Effects of DNA sequence and histone-histone interactions on nucleosome placement

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Repair of UV-induced (6-4) photoproducts in nucleosome core DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.181073398

21 January 2018

Identifiers

DOI

10.1073/PNAS.181073398

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference