(Q33944190)

30 July 2017

title

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature (English)

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30 July 2017

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16

Curtis Huttenhower

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30 July 2017

Phillip J Dexheimer

3

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Dirk Gevers

23

object named as

Dirk Gevers

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Bruce Aronow

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Ramnik J Xavier

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Subra Kugathasan

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Anne M Griffiths

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7

Robert N Baldassano

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Lee A Denson

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Melvin B Heyman

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9

Joel Rosh

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8

Joshua D Noe

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Wallace V Crandall

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David J Keljo

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James Markowitz

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Jeffrey S Hyams

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1

Yael Haberman

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Dora Tang

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Rebekah Karns

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Thomas D Walters

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Timothy L Tickle

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Mi-Ok Kim

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David R Mack

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Susan S Baker

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30 July 2017

language of work or name

English

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publication date

8 July 2014

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Journal of Clinical Investigation

30 July 2017

published in

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30 July 2017

volume

124

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30 July 2017

issue

8

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30 July 2017

page(s)

3617-3633

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The treatment-naive microbiome in new-onset Crohn's disease

30 July 2017

cites work

1 reference

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5 July 2018

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Specific gut commensal flora locally alters T cell tuning to endogenous ligands

5 July 2018

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5 July 2018

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5 July 2018

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Proteomic patterns of colonic mucosal tissues delineate Crohn's colitis and ulcerative colitis

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Patients with inflammatory bowel disease exhibit dysregulated responses to microbial DNA

5 July 2018

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An ileal Crohn's disease gene signature based on whole human genome expression profiles of disease unaffected ileal mucosal biopsies

5 July 2018

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A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

5 July 2018

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Bioinformatics analysis reveals transcriptome and microRNA signatures and drug repositioning targets for IBD and other autoimmune diseases.

5 July 2018

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

5 July 2018

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

5 July 2018

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Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.

5 July 2018

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Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

5 July 2018

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Bayesian community-wide culture-independent microbial source tracking

5 July 2018

1 reference

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Peyer's Patches: The Immune Sensors of the Intestine.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Diet, gut microbiota and immune responses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Supervised classification of microbiota mitigates mislabeling errors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

QIIME allows analysis of high-throughput community sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Loss of hepatocyte-nuclear-factor-4alpha affects colonic ion transport and causes chronic inflammation resembling inflammatory bowel disease in mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

DUOX2-derived reactive oxygen species are effectors of NOD2-mediated antibacterial responses

5 July 2018

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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

5 July 2018

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How to map billions of short reads onto genomes

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Activation of an IL-6:STAT3-dependent transcriptome in pediatric-onset inflammatory bowel disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Peyer's patches and M cells as potential sites of the inflammatory onset in Crohn's disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

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5 July 2018

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Interleukin-10-deficient mice develop chronic enterocolitis

5 July 2018

1 reference

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The germfree state prevents development of gut and joint inflammatory disease in HLA-B27 transgenic rats

5 July 2018

1 reference

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Increased effectiveness of early therapy with anti-tumor necrosis factor-α vs an immunomodulator in children with Crohn's disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Predictive value of epithelial gene expression profiles for response to infliximab in Crohn's disease.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Characterization of intestinal gene expression profiles in Crohn's disease by genome-wide microarray analysis.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Infliximab, azathioprine, or combination therapy for Crohn's disease

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Mucosal healing predicts long-term outcome of maintenance therapy with infliximab in Crohn's disease.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Dual-association of gnotobiotic IL-10-/- mice with 2 nonpathogenic commensal bacteria induces aggressive pancolitis.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109533

Long term outcome of patients with active Crohn's disease exhibiting extensive and deep ulcerations at colonoscopy

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25003194

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Altered lipid profile, lipoprotein composition, and oxidant and antioxidant status in pediatric Crohn disease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25003194

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Vedolizumab for the treatment of active ulcerative colitis: a randomized controlled phase 2 dose-ranging study

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25003194

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1172/JCI75436

1 reference

30 July 2017

1 reference

30 July 2017

1 reference