(Q33945843)

30 July 2017

A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle (English)

1 reference

30 July 2017

1 reference

Anthony C Smith

1

1 reference

PubMed ID

21714867

30 July 2017

Alan J Robinson

series ordinal

2

1 reference

30 July 2017

29 June 2011

1 reference

30 July 2017

1 reference

30 July 2017

5

1 reference

30 July 2017

102

1 reference

PubMed ID

21714867

describes a project that uses

30 July 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-5-102

0 references

cites work

Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

What is flux balance analysis?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

KEGG for representation and analysis of molecular networks involving diseases and drugs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The Universal Protein Resource (UniProt) in 2010

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Role of cardiolipin peroxidation and Ca2+ in mitochondrial dysfunction and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

How mitochondria produce reactive oxygen species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Group contribution method for thermodynamic analysis of complex metabolic networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

5 July 2018

Mitochondrial disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Minimum information requested in the annotation of biochemical models (MIRIAM)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Succinate dehydrogenase deficiency in human

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Myocardial substrate metabolism in the normal and failing heart

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

A novel mutation in the dihydrolipoamide dehydrogenase E3 subunit gene (DLD) resulting in an atypical form of alpha-ketoglutarate dehydrogenase deficiency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Computational prediction of human metabolic pathways from the complete human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The role and structure of mitochondrial carriers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The mitochondrial transporter family (SLC25): physiological and pathological implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Cytoscape: a software environment for integrated models of biomolecular interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Fumaric aciduria: clinical and imaging features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Inborn errors of the Krebs cycle: a group of unusual mitochondrial diseases in human

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Glutamine metabolism and transport in skeletal muscle and heart and their clinical relevance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

2-Ketoglutarate dehydrogenase deficiency, a rare cause of primary hyperlactataemia: report of a new case

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Mutation of the fumarase gene in two siblings with progressive encephalopathy and fumarase deficiency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

gamma-Aminobutyric acid (GABA) metabolism in mammalian neural and nonneural tissues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Mutation of a nuclear succinate dehydrogenase gene results in mitochondrial respiratory chain deficiency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

The molecular basis of dominance.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

A familial progressive neurodegenerative disease with 2-oxoglutaric aciduria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Fumaric aciduria: a new organic aciduria, associated with mental retardation and speech impairment.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Deficient fumarase activity in an infant with fumaricacidemia and its distribution between the different forms of the enzyme seen on isoelectric focusing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Fumarase deficiency is an autosomal recessive encephalopathy affecting both the mitochondrial and the cytosolic enzymes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Alpha-ketoglutarate dehydrogenase deficiency presenting as congenital lactic acidosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Glucose-free fatty acid cycle operates in human heart and skeletal muscle in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Fumarase deficiency: two siblings with enlarged cerebral ventricles and polyhydramnios in utero.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Alterations of myocardial amino acid metabolism in chronic ischemic heart disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

A general computational model of mitochondrial metabolism in a whole organelle scale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Fumarate hydratase deficiency in monozygotic twins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Succinate in dystrophic white matter: a proton magnetic resonance spectroscopy finding characteristic for complex II deficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Effects of riboflavin in children with complex II deficiency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

The effect of hyperpolarized tracer concentration on myocardial uptake and metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Non-invasive measurements of myocardial carbon metabolism using in vivo 13C NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Mitochondrial pH monitored by a new engineered green fluorescent protein mutant.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Extreme pathways and Kirchhoff's second law.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-102

Complex I is the major site of mitochondrial superoxide production by paraquat

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Profiling substrate fluxes in the isolated working mouse heart using 13C-labeled substrates: focusing on the origin and fate of pyruvate and citrate carbons

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Single muscle fibre analyses in 2 brothers with succinate dehydrogenase deficiency.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152903

Altered metabolism causes cardiac dysfunction in perfused hearts from diabetic (db/db) mice

29 October 2018

1 reference

12 December 2020

Myocardial Exchanges of Glutamate, Alanine and Citrate in Controls and Patients with Coronary Artery Disease

1 reference

12 December 2020

Kearns-Sayre syndrome and complex II deficiency

1 reference

12 December 2020

Biochemical investigations and immunoblot analyses of two unrelated patients with an isolated deficiency in complex II of the mitochondrial respiratory chain

1 reference

12 December 2020

Effects of aminooxyacetate on glutamate compartmentation and TCA cycle kinetics in rat hearts

1 reference

12 December 2020

Import of lipids into mitochondria

1 reference

12 December 2020

Glucose and fatty acid metabolism in the isolated working mouse heart

1 reference

12 December 2020

Identifiers

DOI

10.1186/1752-0509-5-102

1 reference

30 July 2017

journals/bmcsb/SmithR11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

30 July 2017

1 reference

PubMed ID

21714867