(Q33952210)

30 July 2017

title

A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to influenza (English)

1 reference

30 July 2017

1 reference

Evolutionary dynamics

1 reference

Thomas B Kepler

4

0 references

Katia Koelle

series ordinal

1

object named as

Katia Koelle

1 reference

30 July 2017

Priya Khatri

2

1 reference

30 July 2017

Meredith Kamradt

series ordinal

3

1 reference

30 July 2017

publication date

24 March 2010

1 reference

Journal of the Royal Society Interface

30 July 2017

published in

1 reference

30 July 2017

volume

7

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30 July 2017

issue

50

1 reference

30 July 2017

page(s)

1257-1274

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maintained by WikiProject

30 July 2017

1 reference

Understanding the dynamics of rapidly evolving pathogens through modeling the tempo of antigenic change: influenza as a case study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Absolute Humidity and the Seasonal Onset of Influenza in the Continental US.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Quantifying the transmissibility of human influenza and its seasonal variation in temperate regions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Quantifying the impact of immune escape on transmission dynamics of influenza

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Discovering the phylodynamics of RNA viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Influenza A gradual and epochal evolution: insights from simple models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Pandemic potential of a strain of influenza A (H1N1): early findings

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Incorporating demographic stochasticity into multi-strain epidemic models: application to influenza A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Capturing escape in infectious disease dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Inapparent infections and cholera dynamics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Changing selective pressure during antigenic changes in human influenza H3.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Inference for nonlinear dynamical systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Stochastic simulation of chemical kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

The reinfection threshold regulates pathogen diversity: the case of influenza.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Comparison of the mutation rates of human influenza A and B viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Mapping the antigenic and genetic evolution of influenza virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Unifying the epidemiological and evolutionary dynamics of pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Ecological and immunological determinants of influenza evolution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Dynamics and selection of many-strain pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Emergence of an influenza B virus with antigenic change

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Heterogeneity of influenza B virus strains in one epidemic season differentiated by monoclonal antibodies and nucleotide sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Cocirculation of two distinct lineages of equine influenza virus subtype H3N8.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Evolutionary characteristics of influenza B virus since its first isolation in 1940: dynamic circulation of deletion and insertion mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Direct sequencing of the HA gene of clinical equine H3N8 influenza virus and comparison with laboratory derived viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Long term trends in the evolution of H(3) HA1 human influenza type A

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Antigenic and genetic evolution of equine H3N8 influenza A viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Evolution of H3N8 equine influenza virus from 1963 to 1991.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Analysis of antigenic variation in equine 2 influenza A viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Antigenic structure of the influenza B virus hemagglutinin: nucleotide sequence analysis of antigenic variants selected with monoclonal antibodies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Determination of the number of nonoverlapping antigenic areas on Hong Kong (H3N2) influenza virus hemagglutinin with monoclonal antibodies and the selection of variants with potential epidemiological significance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Amino acid sequences of haemagglutinins of influenza viruses of the H3 subtype isolated from horses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Genetic drift of equine 2 influenza A virus (H3N8), 1963-1988: analysis by oligonucleotide mapping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Theory for protein mutability and biogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Structural basis of immune recognition of influenza virus hemagglutinin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Antigenic and genetic characterization of the haemagglutinins of recent cocirculating strains of influenza B virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

The Tecumseh Study of Respiratory Illness. IX. Occurence of influenza in the community, 1966--1971

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Naturally acquired immunity to influenza type A: a further prospective study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

The dynamics of cocirculating influenza strains conferring partial cross-immunity.

5 July 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Disentangling extrinsic from intrinsic factors in disease dynamics: a nonlinear time series approach with an application to cholera

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

The outbreak of equine influenza (H3N8) in the United Kingdom in 1989: diagnostic use of an antigen capture ELISA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Improving the realism of deterministic multi-strain models: implications for modelling influenza A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Characterization of new epidemic strains of influenza B virus by using neutralizing monoclonal antibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Antigenic variants with amino acid deletions clarify a neutralizing epitope specific for influenza B virus Victoria group strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Influenza Escapes Immunity Along Neutral Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

A NEW INFLUENZA VIRUS ASSOCIATED WITH EQUINE RESPIRATORY DISEASE

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Simple model of epidemics with pathogen mutation.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Identification of two antigenically and genetically distinct lineages of H3N8 equine influenza virus in Sweden

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Evolutionary pattern of the H 3 haemagglutinin of equine influenza viruses: multiple evolutionary lineages and frozen replication

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2894885

Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation

29 October 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2010.0007

Are equine 1 influenza viruses still present in horses?

21 January 2018

1 reference

12 December 2020

Genetic characterization of equine influenza viruses isolated in Italy between 1999 and 2005

1 reference

12 December 2020

Evolution of the hemagglutinin of equine H3 influenza viruses

1 reference

12 December 2020

Identification of the binding sites to monoclonal antibodies on A/USSR/90/77 (H1N1) hemagglutinin and their involvement in antigenic drift in H1N1 influenza viruses

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSIF.2010.0007

1 reference

30 July 2017

1 reference

30 July 2017

1 reference