(Q33955095)

30 July 2017

title

The 3-base periodicity and codon usage of coding sequences are correlated with gene expression at the level of transcription elongation (English)

1 reference

30 July 2017

Edoardo Trotta

1

1 reference

30 July 2017

language of work or name

English

0 references

publication date

28 June 2011

1 reference

30 July 2017

1 reference

30 July 2017

volume

6

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30 July 2017

issue

6

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30 July 2017

page(s)

e21590

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

28 June 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Selection on Codon Bias

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Characterization of the yeast transcriptome

5 July 2018

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Codon pair utilization biases influence translational elongation step times

5 July 2018

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5 July 2018

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The pitch of chromatin DNA is reflected in its nucleotide sequence

5 July 2018

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Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

5 July 2018

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5 July 2018

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5 July 2018

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Coevolution of codon usage and transfer RNA abundance

5 July 2018

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Codon preferences in free-living microorganisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125259

Periodicity in DNA coding sequences: implications in gene evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125259

A Fourier characteristic of coding sequences: origins and a non-Fourier approximation.

5 July 2018

1 reference

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Codon pairs in the genome of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021590

Relationship between G+C content, ORF-length and mRNA concentration in Saccharomyces cerevisiae.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021590

Cooperation between RNA polymerase molecules in transcription elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021590

Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021590

GenRGenS: software for generating random genomic sequences and structures

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021590

On the origin of the periodicity of three in protein coding DNA sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21738721

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

There is a steady-state transcriptome in exponentially growing yeast cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21738721

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21738721

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0021590

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference