(Q33960605)

30 July 2017

title

Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides (English)

1 reference

30 July 2017

1 reference

Pratik Jagtap

7

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author name string

Douglas W Mahoney

1

1 reference

30 July 2017

Terry M Therneau

2

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30 July 2017

Carrie J Heppelmann

3

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30 July 2017

Leeann Higgins

4

1 reference

30 July 2017

Linda M Benson

5

1 reference

30 July 2017

Roman M Zenka

6

1 reference

30 July 2017

Gary L Nelsestuen

8

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30 July 2017

H Robert Bergen

9

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30 July 2017

Ann L Oberg

10

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30 July 2017

language of work or name

1 reference

2 August 2011

1 reference

Journal of Proteome Research

30 July 2017

published in

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30 July 2017

volume

10

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30 July 2017

issue

9

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30 July 2017

page(s)

4325-4333

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Addressing accuracy and precision issues in iTRAQ quantitation

30 July 2017

cites work

1 reference

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A comparison of the accuracy of iTRAQ quantification by nLC-ESI MSMS and nLC-MALDI MSMS methods

5 July 2018

1 reference

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A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

5 July 2018

1 reference

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iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".

5 July 2018

1 reference

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Evaluation of a new high-dimensional miRNA profiling platform

5 July 2018

1 reference

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Advanced proteomic technologies for cancer biomarker discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Statistical design of quantitative mass spectrometry-based proteomic experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Quality assessment and data analysis for microRNA expression arrays

5 July 2018

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Temporal stability of the urinary proteome after kidney transplant: more sensitive than protein composition?

5 July 2018

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Genetics and genomics: gene expression microarrays

5 July 2018

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Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage

5 July 2018

1 reference

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A statistical model for iTRAQ data analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Normalization regarding non-random missing values in high-throughput mass spectrometry data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Estimation of transformation parameters for microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

iTRAQ experimental design for plasma biomarker discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Technical, experimental, and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ).

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Joint estimation of calibration and expression for high-density oligonucleotide arrays

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Characterizing dye bias in microarray experiments

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Bias as a threat to the validity of cancer molecular-marker research

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Normalization of two-channel microarray experiments: a semiparametric approach.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Faster cyclic loess: normalizing RNA arrays via linear models

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3166364

Protein quantification in label-free LC-MS experiments

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21755926

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR2001308

1 reference

30 July 2017

1 reference

30 July 2017

1 reference